Taxonomic and functional insights into rock varnish microbiome using shotgun metagenomics

Insights into microbial involvement in desert varnish formation retrieved from metagenomic analysis

(2018) Naama Lang-Yona et al.   Environmental Microbiology Reports

Alteration of rocks by endolithic organisms is one of the pathways for the beginning of soils on Earth

(2018) Nikita Mergelov et al.   Scientific Reports

Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper

(2017) Jaime Huerta-Cepas et al.   MOLECULAR BIOLOGY AND EVOLUTION

BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics

(2017) Robert M Waterhouse et al.   MOLECULAR BIOLOGY AND EVOLUTION

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

(2017) Robert M Bowers et al.   NATURE BIOTECHNOLOGY

Centrifuge: rapid and sensitive classification of metagenomic sequences

(2016) Daehwan Kim et al.   GENOME RESEARCH

MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices

(2016) Dinghua Li et al.   METHODS

Comparison of Rock Varnish Bacterial Communities with Surrounding Non-Varnished Rock Surfaces: Taxon-Specific Analysis and Morphological Description

(2015) Alfonso Esposito et al.   MICROBIAL ECOLOGY

Anvi’o: an advanced analysis and visualization platform for ‘omics data

(2015) A. Murat Eren et al.   PeerJ

Binning metagenomic contigs by coverage and composition

(2014) Johannes Alneberg et al.   NATURE METHODS

Wind-driven nutrient pulses to the subsurface chlorophyll maximum in seasonally stratified shelf seas

(2013) Charlotte Williams et al.   GEOPHYSICAL RESEARCH LETTERS

UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota

(2013) J. H. Campbell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes

(2013) Nicola Segata et al.   Nature Communications

Desiccation stress and tolerance in green algae: consequences for ultrastructure, physiological and molecular mechanisms

(2013) Andreas Holzinger et al.   Frontiers in Plant Science

Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling

(2013) Laura A Hug et al.   Microbiome

The potential transient dynamics of forests in New England under historical and projected future climate change

(2012) Guoping Tang et al.   CLIMATIC CHANGE

Endolithic pedogenesis and rock varnish on massive crystalline rocks in East Antarctica

(2012) N. S. Mergelov et al.   EURASIAN SOIL SCIENCE

Fungal Communities Associated with Rock Varnish in Black Canyon, New Mexico: Casual Inhabitants or Essential Partners?

(2012) Kylea J. Parchert et al.   GEOMICROBIOLOGY JOURNAL

Mantle-derived noble gases in ore-forming fluids of the granite-related Yaogangxian tungsten deposit, Southeastern China

(2012) Rui-Zhong Hu et al.   MINERALIUM DEPOSITA

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Soils and climate change

(2012) Pete Smith   Current Opinion in Environmental Sustainability

Common ancestry of iron oxide- and iron-sulfide-based biomineralization in magnetotactic bacteria

(2011) Fernanda Abreu et al.   ISME Journal

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Diversity of rock varnish bacterial communities from Black Canyon, New Mexico

(2010) Diana E. Northup et al.   JOURNAL OF GEOPHYSICAL RESEARCH

Evidence for a biogenic, microorganismal origin of rock varnish from the Gangdese Belt of Tibet

(2010) Xiaohong Wang et al.   MICRON

A glacier inventory for South Tyrol, Italy, based on airborne laser-scanner data

(2010) Christoph Knoll et al.   ANNALS OF GLACIOLOGY

Assessment of Bias Associated with Incomplete Extraction of Microbial DNA from Soil

(2009) L. M. Feinstein et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Astrobiological Implications of Rock Varnish in Tibet

(2009) David Krinsley et al.   ASTROBIOLOGY

Preparation of fatty acid methyl esters for gas-liquid chromatography

(2009) Ken'ichi Ichihara et al.   JOURNAL OF LIPID RESEARCH

Cretaceous metamorphism in the Austroalpine Matsch Unit (Eastern Alps): The interrelation between deformation and chemical equilibration processes

(2009) Gerlinde Habler et al.   MINERALOGY AND PETROLOGY

Protein oxidation: key to bacterial desiccation resistance?

(2008) James K Fredrickson et al.   ISME Journal