Comparative genomic analysis of retrogene repertoire in two green algae Volvox carteri and Chlamydomonas reinhardtii

The life history of retrocopies illuminates the evolution of new mammalian genes

(2016) Francesco Nicola Carelli et al.   GENOME RESEARCH

Evolutionary fate and implications of retrocopies in the African coelacanth genome

(2015) Kang Du et al.   BMC GENOMICS

A Genome-Wide Landscape of Retrocopies in Primate Genomes

(2015) Fábio C.P. Navarro et al.   Genome Biology and Evolution

Genome-wide analysis of alternative splicing in Volvox carteri

(2015) Arash Kianianmomeni et al.   BMC GENOMICS

RetrogeneDB—A Database of Animal Retrogenes

(2014) Michał Kabza et al.   MOLECULAR BIOLOGY AND EVOLUTION

Newly evolved introns in human retrogenes provide novel insights into their evolutionary roles

(2012) Li-Fang Kang et al.   BMC EVOLUTIONARY BIOLOGY

"Orphan" Retrogenes in the Human Genome

(2012) J. Ciomborowska et al.   MOLECULAR BIOLOGY AND EVOLUTION

The role of duplications in the evolution of genomes highlights the need for evolutionary-based approaches in comparative genomics

(2011) Anthony Levasseur et al.   Biology Direct

Retrogenes in Rice (Oryza sativa L. ssp. japonica) Exhibit Correlated Expression with Their Source Genes

(2011) Hiroaki Sakai et al.   Genome Biology and Evolution

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough

(2011) Hervé Philippe et al.   PLOS BIOLOGY

ETE: a python Environment for Tree Exploration

(2010) Jaime Huerta-Cepas et al.   BMC BIOINFORMATICS

Origins, evolution, and phenotypic impact of new genes

(2010) H. Kaessmann   GENOME RESEARCH

Primate and Rodent Specific Intron Gains and the Origin of Retrogenes with Splice Variants

(2010) Michał W Szcześniak et al.   MOLECULAR BIOLOGY AND EVOLUTION

The evolution of gene duplications: classifying and distinguishing between models

(2010) Hideki Innan et al.   NATURE REVIEWS GENETICS

TheChlorella variabilisNC64A Genome Reveals Adaptation to Photosymbiosis, Coevolution with Viruses, and Cryptic Sex

(2010) Guillaume Blanc et al.   PLANT CELL

Genomic Analysis of Organismal Complexity in the Multicellular Green Alga Volvox carteri

(2010) S. E. Prochnik et al.   SCIENCE

Evolutionary Origin and Functions of Retrogene Introns

(2009) M. Fablet et al.   MOLECULAR BIOLOGY AND EVOLUTION

Extensive Structural Renovation of Retrogenes in the Evolution of the Populus Genome

(2009) Z. Zhu et al.   PLANT PHYSIOLOGY

Burst of Young Retrogenes and Independent Retrogene Formation in Mammals

(2009) Deng Pan et al.   PLoS One

Triassic origin and early radiation of multicellular volvocine algae

(2009) M. D. Herron et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons

(2008) David Ellinghaus et al.   BMC BIOINFORMATICS

EVOLUTION OF COMPLEXITY IN THE VOLVOCINE ALGAE: TRANSITIONS IN INDIVIDUALITY THROUGH DARWIN'S EYE

(2008) Matthew D. Herron et al.   EVOLUTION

RNA-based gene duplication: mechanistic and evolutionary insights

(2008) Henrik Kaessmann et al.   NATURE REVIEWS GENETICS

InterPro: the integrative protein signature database

(2008) S. Hunter et al.   NUCLEIC ACIDS RESEARCH

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY