MONGKIE: an integrated tool for network analysis and visualization for multi-omics data

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

The Somatic Genomic Landscape of Glioblastoma

(2013) Cameron W. Brennan et al.   CELL

A travel guide to Cytoscape plugins

(2012) Rintaro Saito et al.   NATURE METHODS

PSICQUIC and PSISCORE: accessing and scoring molecular interactions

(2011) Bruno Aranda et al.   NATURE METHODS

hiPathDB: a human-integrated pathway database with facile visualization

(2011) N. Yu et al.   NUCLEIC ACIDS RESEARCH

Visualization of omics data for systems biology

(2010) Nils Gehlenborg et al.   NATURE METHODS

Automated Network Analysis Identifies Core Pathways in Glioblastoma

(2010) Ethan Cerami et al.   PLoS One

Angiopoietin-1 Overexpression Modulates Vascular Endothelium to Facilitate Tumor Cell Dissemination and Metastasis Establishment

(2009) T. Holopainen et al.   CANCER RESEARCH

Interaction Techniques for Selecting and Manipulating Subgraphs in Network Visualizations

(2009) M.J. McGuffin et al.   IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS

VistaClara: an expression browser plug-in for Cytoscape

(2008) R. Kincaid et al.   BIOINFORMATICS