Phylogenetic and multivariate analyses to determine the effect of agricultural land-use intensification and soil physico-chemical properties on N-cycling microbial communities in drained Mediterranean peaty soils

Agricultural abandonment in Mediterranean reclaimed peaty soils: long-term effects on soil chemical properties, arbuscular mycorrhizas and CO2 flux

(2015) Elisa Pellegrino et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Land-use intensity and soil properties shape the composition of fungal communities in Mediterranean peaty soils drained for agricultural purposes

(2015) Valentina Ciccolini et al.   BIOLOGY AND FERTILITY OF SOILS

Tillage effects on soil nitrification and the dynamic changes in nitrifying microorganisms in a subtropical rice-based ecosystem: A long-term field study

(2015) Shiwei Li et al.   SOIL & TILLAGE RESEARCH

pH regulates key players of nitrification in paddy soils

(2015) Xianjun Jiang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Long-term fertilization effects on active ammonia oxidizers in an acidic upland soil in China

(2015) Xinli Wang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Changes in bacterial and archaeal community assemblages along an ombrotrophic peat bog profile

(2014) Edoardo Puglisi et al.   BIOLOGY AND FERTILITY OF SOILS

Microbial community development and unseen diversity recovery in inoculated sterile soil

(2014) Tom O. Delmont et al.   BIOLOGY AND FERTILITY OF SOILS

Impact of fertilization on the abundance of nitrifiers and denitrifiers at the root–soil interface of plants with different uptake strategies for nitrogen

(2014) Eva-Maria Kastl et al.   BIOLOGY AND FERTILITY OF SOILS

The Influence of Land Use on the Abundance and Diversity of Ammonia Oxidizers

(2014) Dayong Zhao et al.   CURRENT MICROBIOLOGY

Abundance and community structure of ammonia-oxidizingArchaeaandBacteriain response to fertilization and mowing in a temperate steppe in Inner Mongolia

(2014) Yong-Liang Chen et al.   FEMS MICROBIOLOGY ECOLOGY

Impacts of Edaphic Factors on Communities of Ammonia-Oxidizing Archaea, Ammonia-Oxidizing Bacteria and Nitrification in Tropical Soils

(2014) Vidya de Gannes et al.   PLoS One

Identifying response groups of soil nitrifiers and denitrifiers to grazing and associated soil environmental drivers in Tibetan alpine meadows

(2014) Zhen Xie et al.   SOIL BIOLOGY & BIOCHEMISTRY

Abundance and community structure of ammonia-oxidizing microorganisms in reservoir sediment and adjacent soils

(2013) Xiaoyan Wang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Effect of land use on the denitrification, abundance of denitrifiers, and total nitrogen gas production in the subtropical region of China

(2013) Yongjie Yu et al.   BIOLOGY AND FERTILITY OF SOILS

Influence of nitrogen fertilization on soil ammonia oxidizer and denitrifier abundance, microbial biomass, and enzyme activities in an alpine meadow

(2013) Xiao-Fang Tian et al.   BIOLOGY AND FERTILITY OF SOILS

Multi-factorial drivers of ammonia oxidizer communities: evidence from a national soil survey

(2013) Huaiying Yao et al.   ENVIRONMENTAL MICROBIOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Consequences on macroporosity and bacterial diversity of adopting a no-tillage farming system in a clayish soil of Central Italy

(2013) Roberta Pastorelli et al.   SOIL BIOLOGY & BIOCHEMISTRY

Physiology and Diversity of Ammonia-Oxidizing Archaea

(2012) David A. Stahl et al.   Annual Review of Microbiology

Responses of bacterial and archaeal ammonia oxidisers of an acidic luvisols soil to different nitrogen fertilization rates after 9 years

(2012) Yong-gang Xu et al.   BIOLOGY AND FERTILITY OF SOILS

Predominance of thaumarchaeal ammonia oxidizer abundance and transcriptional activity in an acidic fen

(2012) Martina Herrmann et al.   ENVIRONMENTAL MICROBIOLOGY

Fluctuations in ammonia oxidizing communities across agricultural soils are driven by soil structure and pH

(2012) Michele C. Pereira e Silva   Frontiers in Microbiology

Drivers of archaeal ammonia-oxidizing communities in soil

(2012) Kateryna Zhalnina et al.   Frontiers in Microbiology

Effects of soil management on structure and activity of denitrifying bacterial communities

(2011) Roberta Pastorelli et al.   APPLIED SOIL ECOLOGY

Abundance and community structure of ammonia-oxidizing archaea and bacteria in an acid paddy soil

(2011) Xin Chen et al.   BIOLOGY AND FERTILITY OF SOILS

The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology

(2011) Michael Pester et al.   CURRENT OPINION IN MICROBIOLOGY

Comparison of land nitrogen budgets for European agriculture by various modeling approaches

(2011) W. de Vries et al.   ENVIRONMENTAL POLLUTION

Abundance, diversity and functional gene expression of denitrifier communities in adjacent riparian and agricultural zones

(2011) Catherine E. Dandie et al.   FEMS MICROBIOLOGY ECOLOGY

Spatial distribution of ammonia-oxidizing bacteria and archaea across a 44-hectare farm related to ecosystem functioning

(2011) Ella Wessén et al.   ISME Journal

Ammonia-oxidizing archaea have more important role than ammonia-oxidizing bacteria in ammonia oxidation of strongly acidic soils

(2011) Li-Mei Zhang et al.   ISME Journal

Temporal changes in abundance and composition of ammonia-oxidizing bacterial and archaeal communities in a drained peat soil in relation to N2O emissions

(2011) Janet Andert et al.   JOURNAL OF SOILS AND SEDIMENTS

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Impact on soil quality of a 10-year-old short-rotation coppice poplar stand compared with intensive agricultural and uncultivated systems in a Mediterranean area

(2010) Elisa Pellegrino et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Stable Isotope Probing Analysis of Interactions between Ammonia Oxidizers

(2010) M. Tourna et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Soil Resources Influence Spatial Patterns of Denitrifying Communities at Scales Compatible with Land Management

(2010) K. Enwall et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Archaea rather than bacteria control nitrification in two agricultural acidic soils

(2010) Cécile Gubry-Rangin et al.   FEMS MICROBIOLOGY ECOLOGY

Nitrifiers and denitrifiers respond rapidly to changed moisture and increasing temperature in a pristine forest soil

(2010) Ute Szukics et al.   FEMS MICROBIOLOGY ECOLOGY

Various players in the nitrogen cycle: Diversity and functions of the microorganisms involved in nitrification and denitrification

(2010) Masahito Hayatsu et al.   SOIL SCIENCE AND PLANT NUTRITION

Diversity of nirK Denitrifying Genes and Transcripts in an Agricultural Soil

(2009) S. Wertz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Season and management related changes in the diversity of nitrifying and denitrifying bacteria over winter and spring

(2009) Jillian Smith et al.   APPLIED SOIL ECOLOGY

Spatial patterns of bacterial taxa in nature reflect ecological traits of deep branches of the 16S rRNA bacterial tree

(2009) Laurent Philippot et al.   ENVIRONMENTAL MICROBIOLOGY

Altitude ammonia-oxidizing bacteria and archaea in soils of Mount Everest

(2009) Li-Mei Zhang et al.   FEMS MICROBIOLOGY ECOLOGY

Relationship between N-cycling communities and ecosystem functioning in a 50-year-old fertilization experiment

(2009) Sara Hallin et al.   ISME Journal

Nitrification driven by bacteria and not archaea in nitrogen-rich grassland soils

(2009) H. J. Di et al.   Nature Geoscience

Temporal shifts in diversity and quantity of nirS and nirK in a rice paddy field soil

(2009) Megumi Yoshida et al.   SOIL BIOLOGY & BIOCHEMISTRY

The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria

(2008) Graeme W. Nicol et al.   ENVIRONMENTAL MICROBIOLOGY

Abundance and composition of ammonia-oxidizing bacteria and ammonia-oxidizing archaea communities of an alkaline sandy loam

(2008) Ju-pei Shen et al.   ENVIRONMENTAL MICROBIOLOGY

Influence of temperature and soil water content on bacterial, archaeal and denitrifying microbial communities in drained fen grassland soil microcosms

(2008) Blaž Stres et al.   FEMS MICROBIOLOGY ECOLOGY