Genome-wide analysis, transcription factor network approach and gene expression profile of GH3 genes over early somatic embryogenesis in Coffea spp

Genome-wide identification and characterization of CKIN/SnRK gene family in Chlamydomonas reinhardtii

(2019) Francisco Colina et al.   Scientific Reports

The Gene Structure and Expression Level Changes of the GH3 Gene Family in Brassica napus Relative to Its Diploid Ancestors

(2019) Ruihua Wang et al.   Genes

In silico and in vivo analysis of ABI3 and VAL2 genes during somatic embryogenesis of Coffea arabica: competence acquisition and developmental marker genes

(2019) Natália Chagas Freitas et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Molecular Mechanisms of Plant Regeneration

(2019) Momoko Ikeuchi et al.   Annual Review of Plant Biology

CRISPR/Cas9-mediated efficient targeted mutagenesis has the potential to accelerate the domestication of Coffea canephora

(2018) Jean-Christophe Breitler et al.   PLANT CELL TISSUE AND ORGAN CULTURE

The Hsp70 Gene Family in Solanum tuberosum: Genome-Wide Identification, Phylogeny, and Expression Patterns

(2018) Jia Liu et al.   Scientific Reports

Coffee Somatic Embryogenesis: How Did Research, Experience Gained and Innovations Promote the Commercial Propagation of Elite Clones From the Two Cultivated Species?

(2018) Hervé Etienne et al.   Frontiers in Plant Science

Varying Auxin Levels Induce Distinct Pluripotent States in Callus Cells

(2018) Jinwoo Shin et al.   Frontiers in Plant Science

Expression of two indole-3-acetic acid (IAA)-amido synthetase (GH3) genes during fruit development of raspberry (Rubus idaeus Heritage)

(2018) Maricarmen Bernales et al.   SCIENTIA HORTICULTURAE

Genome-wide identification and characterization of laccase gene family in Citrus sinensis

(2018) Xiaoyong Xu et al.   GENE

Genome-wide identification and expression analysis of glycine-rich RNA-binding protein family in sweet potato wild relative Ipomoea trifida

(2018) Yan Lu et al.   GENE

Phylogenomic Synteny Network Analysis of MADS-Box Transcription Factor Genes Reveals Lineage-Specific Transpositions, Ancient Tandem Duplications, and Deep Positional Conservation

(2017) Tao Zhao et al.   PLANT CELL

Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis

(2017) Barbara Wójcikowska et al.   PLANT CELL REPORTS

The BABY BOOM transcription factor activates the LEC1-ABI3-FUS3-LEC2 network to induce somatic embryogenesis

(2017) Anneke Horstman et al.   PLANT PHYSIOLOGY

Localization and transport of indole-3-acetic acid during somatic embryogenesis in Coffea canephora

(2017) Ruth E. Márquez-López et al.   PROTOPLASMA

Somatic embryogenesis-derived coffee plantlets can be efficiently propagated by horticultural rooted mini-cuttings: A boost for somatic embryogenesis

(2017) Frédéric Georget et al.   SCIENTIA HORTICULTURAE

Comparative Transcriptome Analysis of SE initial dedifferentiation in cotton of different SE capability

(2017) Aiping Cao et al.   Scientific Reports

Somatic Embryogenesis in Coffee: The Evolution of Biotechnology and the Integration of Omics Technologies Offer Great Opportunities

(2017) Nádia A. Campos et al.   Frontiers in Plant Science

Metabolomic and Proteomic Analysis of Maize Embryonic Callus induced from immature embryo

(2017) Fei Ge et al.   Scientific Reports

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants

(2016) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

Validation of reference genes for qPCR analysis of Coffea arabica L. somatic embryogenesis-related tissues

(2016) Natália Chagas Freitas et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Arabidopsis thalianaGH3.5 acyl acid amido synthetase mediates metabolic crosstalk in auxin and salicylic acid homeostasis

(2016) Corey S. Westfall et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Caffeine: Friend or Foe?

(2016) Candace Doepker et al.   Annual Review of Food Science and Technology

Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies

(2016) Yuvraj Indoliya et al.   Scientific Reports

Diverse functions of KNOX transcription factors in the diploid body plan of plants

(2015) Katsutoshi Tsuda et al.   CURRENT OPINION IN PLANT BIOLOGY

Genome-wide identification, expression analysis of GH3 family genes in Medicago truncatula under stress-related hormones and Sinorhizobium meliloti infection

(2014) Yanjun Yang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

GSDS 2.0: an upgraded gene feature visualization server

(2014) Bo Hu et al.   BIOINFORMATICS

Morphological characteristics and cell viability of coffee plants calli

(2014) Marlúcia Souza Pádua et al.   CIENCIA RURAL

Total antioxidant capacity and phenolic content of the Brazilian diet: a real scenario

(2014) Eloá Angélica Koehnlein et al.   INTERNATIONAL JOURNAL OF FOOD SCIENCES AND NUTRITION

Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance

(2014) Sara Simonini et al.   JOURNAL OF EXPERIMENTAL BOTANY

SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information

(2014) Marco Biasini et al.   NUCLEIC ACIDS RESEARCH

SAUR Inhibition of PP2C-D Phosphatases Activates Plasma Membrane H+-ATPases to Promote Cell Expansion in Arabidopsis

(2014) A. K. Spartz et al.   PLANT CELL

Alterations in the Transcriptome of Soybean in Response to Enhanced Somatic Embryogenesis Promoted by Orthologs of AGAMOUS-Like15 and AGAMOUS-Like18

(2014) Q. Zheng et al.   PLANT PHYSIOLOGY

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis

(2014) F. Denoeud et al.   SCIENCE

Genome-wide analysis of the GH3 family in apple (Malus × domestica)

(2013) Huazhao Yuan et al.   BMC GENOMICS

Gene duplication as a driver of plant morphogenetic evolution

(2013) Stefan A Rensing   CURRENT OPINION IN PLANT BIOLOGY

Characterization of a Putative Serk-Like Ortholog in Embryogenic Cell Suspension Cultures of Coffea arabica L.

(2013) Anderson Tadeu Silva et al.   PLANT MOLECULAR BIOLOGY REPORTER

Genome-wide investigation and expression analysis suggest diverse roles of auxin-responsive GH3 genes during development and response to different stimuli in tomato (Solanum lycopersicum)

(2012) Rahul Kumar et al.   MOLECULAR GENETICS AND GENOMICS

Crystal Structure of an Indole-3-Acetic Acid Amido Synthetase from Grapevine Involved in Auxin Homeostasis

(2012) T. S. Peat et al.   PLANT CELL

Structural Basis for Prereceptor Modulation of Plant Hormones by GH3 Proteins

(2012) C. S. Westfall et al.   SCIENCE

Agrobacterium-mediated genetic transformation of Coffea arabica (L.) is greatly enhanced by using established embryogenic callus cultures

(2011) Alessandra F Ribas et al.   BMC PLANT BIOLOGY

Transcriptional Regulation ofArabidopsis LEAFY COTYLEDON2InvolvesRLE, acis-Element That Regulates Trimethylation of Histone H3 at Lysine-27

(2011) Nathalie Berger et al.   PLANT CELL

Evolutionary history of the GH3 family of acyl adenylases in rosids

(2011) Rachel A. Okrent et al.   PLANT MOLECULAR BIOLOGY

KNOX genes: versatile regulators of plant development and diversity

(2010) A. Hay et al.   DEVELOPMENT

Protein structure homology modeling using SWISS-MODEL workspace

(2009) Lorenza Bordoli et al.   Nature Protocols