Predictive modelling using pathway scores: robustness and significance of pathway collections

De novo pathway-based biomarker identification

(2017) Nicolas Alcaraz et al.   NUCLEIC ACIDS RESEARCH

FERAL: network-based classifier with application to breast cancer outcome prediction

(2015) Amin Allahyar et al.   BIOINFORMATICS

Current composite-feature classification methods do not outperform simple single-genes classifiers in breast cancer prognosis

(2013) Christine Staiger et al.   Frontiers in Genetics

Pathway-based classification of cancer subtypes

(2012) Shinuk Kim et al.   Biology Direct

Comparative evaluation of set-level techniques in predictive classification of gene expression samples

(2012) Matej Holec et al.   BMC BIOINFORMATICS

A Critical Evaluation of Network and Pathway-Based Classifiers for Outcome Prediction in Breast Cancer

(2012) Christine Staiger et al.   PLoS One

Strategies for aggregating gene expression data: The collapseRows R function

(2011) Jeremy A Miller et al.   BMC BIOINFORMATICS

Added predictive value of high-throughput molecular data to clinical data and its validation

(2011) A.-L. Boulesteix et al.   BRIEFINGS IN BIOINFORMATICS

Most Random Gene Expression Signatures Are Significantly Associated with Breast Cancer Outcome

(2011) David Venet et al.   PLoS Computational Biology

Development of biomarker classifiers from high-dimensional data

(2009) Songjoon Baek et al.   BRIEFINGS IN BIOINFORMATICS

Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1

(2009) David A. Barbie et al.   NATURE

The carcinoGENOMICS project: Critical selection of model compounds for the development of omics-based in vitro carcinogenicity screening assays

(2008) M VINKEN et al.   MUTATION RESEARCH-REVIEWS IN MUTATION RESEARCH

ConsensusPathDB—a database for integrating human functional interaction networks

(2008) Atanas Kamburov et al.   NUCLEIC ACIDS RESEARCH

Inferring Pathway Activity toward Precise Disease Classification

(2008) Eunjung Lee et al.   PLoS Computational Biology