PyBoolNet: a python package for the generation, analysis and visualization of boolean networks

Cooperative development of logical modelling standards and tools with CoLoMoTo

(2015) A. Naldi et al.   BIOINFORMATICS

Computing maximal and minimal trap spaces of Boolean networks

(2015) Hannes Klarner et al.   Natural Computing

Computing maximal and minimal trap spaces of Boolean networks

(2015) Hannes Klarner et al.   Natural Computing

SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools

(2013) Claudine Chaouiya et al.   BMC Systems Biology

Inferring Boolean network structure via correlation

(2011) Markus Maucher et al.   BIOINFORMATICS

"Antelope": a hybrid-logic model checker for branching-time Boolean GRN analysis

(2011) Gustavo Arellano et al.   BMC BIOINFORMATICS

Multiscale Binarization of Gene Expression Data for Reconstructing Boolean Networks

(2011) M. Hopfensitz et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

BoolNet—an R package for generation, reconstruction and analysis of Boolean networks

(2010) Christoph Müssel et al.   BIOINFORMATICS

Logical modelling of regulatory networks with GINsim 2.3

(2009) A. Naldi et al.   BIOSYSTEMS