UniProt-DAAC: domain architecture alignment and classification, a new method for automatic functional annotation in UniProtKB

JPred4: a protein secondary structure prediction server

(2015) Alexey Drozdetskiy et al.   NUCLEIC ACIDS RESEARCH

A Million Peptide Motifs for the Molecular Biologist

(2014) Peter Tompa et al.   MOLECULAR CELL

Gene Ontology Consortium: going forward

(2014)   NUCLEIC ACIDS RESEARCH

HAMAP in 2015: updates to the protein family classification and annotation system

(2014) Ivo Pedruzzi et al.   NUCLEIC ACIDS RESEARCH

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

Rapid similarity search of proteins using alignments of domain arrangements

(2013) Nicolas Terrapon et al.   BIOINFORMATICS

A large-scale evaluation of computational protein function prediction

(2013) Predrag Radivojac et al.   NATURE METHODS

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Automatic Identification of Highly Conserved Family Regions and Relationships in Genome Wide Datasets Including Remote Protein Sequences

(2013) Tunca Doğan et al.   PLoS One

Protein domain recurrence and order can enhance prediction of protein functions

(2012) Mario Abdel Messih et al.   BIOINFORMATICS

dcGO: database of domain-centric ontologies on functions, phenotypes, diseases and more

(2012) Hai Fang et al.   NUCLEIC ACIDS RESEARCH

The UniProt-GO Annotation database in 2011

(2011) E. C. Dimmer et al.   NUCLEIC ACIDS RESEARCH

Some remarks on protein attribute prediction and pseudo amino acid composition

(2010) Kuo-Chen Chou   JOURNAL OF THEORETICAL BIOLOGY

GOPred: GO Molecular Function Prediction by Combined Classifiers

(2010) Ömer Sinan Saraç et al.   PLoS One

Protein comparison at the domain architecture level

(2009) Byungwook Lee et al.   BMC BIOINFORMATICS

Protein domain organisation: adding order

(2009) Sarah K Kummerfeld et al.   BMC BIOINFORMATICS

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

SUPERFAMILY—sophisticated comparative genomics, data mining, visualization and phylogeny

(2008) Derek Wilson et al.   NUCLEIC ACIDS RESEARCH