Improving microRNA target prediction by modeling with unambiguously identified microRNA-target pairs from CLIP-ligation studies
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Improving microRNA target prediction by modeling with unambiguously identified microRNA-target pairs from CLIP-ligation studies
Authors
Keywords
-
Journal
BIOINFORMATICS
Volume 32, Issue 9, Pages 1316-1322
Publisher
Oxford University Press (OUP)
Online
2016-02-15
DOI
10.1093/bioinformatics/btw002
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Quantifying the strength of miRNA–target interactions
- (2015) Jeremie Breda et al. METHODS
- Accurate transcriptome-wide prediction of microRNA targets and small interfering RNA off-targets with MIRZA-G
- (2015) Rafal Gumienny et al. NUCLEIC ACIDS RESEARCH
- Predicting effective microRNA target sites in mammalian mRNAs
- (2015) Vikram Agarwal et al. eLife
- Composition of seed sequence is a major determinant of microRNA targeting patterns
- (2014) X. Wang BIOINFORMATICS
- Unambiguous Identification of miRNA:Target Site Interactions by Different Types of Ligation Reactions
- (2014) Stefanie Grosswendt et al. MOLECULAR CELL
- Database resources of the National Center for Biotechnology Information
- (2014) NUCLEIC ACIDS RESEARCH
- Mapping the Human miRNA Interactome by CLASH Reveals Frequent Noncanonical Binding
- (2013) Aleksandra Helwak et al. CELL
- A biophysical miRNA-mRNA interaction model infers canonical and noncanonical targets
- (2013) Mohsen Khorshid et al. NATURE METHODS
- CLIP-based prediction of mammalian microRNA binding sites
- (2013) Chaochun Liu et al. NUCLEIC ACIDS RESEARCH
- miRBase: annotating high confidence microRNAs using deep sequencing data
- (2013) Ana Kozomara et al. NUCLEIC ACIDS RESEARCH
- Functional microRNA targets in protein coding sequences
- (2012) Martin Reczko et al. BIOINFORMATICS
- NCBI GEO: archive for functional genomics data sets—update
- (2012) Tanya Barrett et al. NUCLEIC ACIDS RESEARCH
- A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language?
- (2011) Leonardo Salmena et al. CELL
- Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP
- (2010) Markus Hafner et al. CELL
- Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites
- (2010) Doron Betel et al. GENOME BIOLOGY
- MicroRNAs: Target Recognition and Regulatory Functions
- (2009) David P. Bartel CELL
- Argonaute HITS-CLIP decodes microRNA–mRNA interaction maps
- (2009) Sung Wook Chi et al. NATURE
- The impact of microRNAs on protein output
- (2008) Daehyun Baek et al. NATURE
- Widespread changes in protein synthesis induced by microRNAs
- (2008) Matthias Selbach et al. NATURE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreDiscover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversation