Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art
Authors
Keywords
-
Journal
BIOINFORMATICS
Volume -, Issue -, Pages btw811
Publisher
Oxford University Press (OUP)
Online
2016-12-17
DOI
10.1093/bioinformatics/btw811
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Evaluation of hybrid and non-hybrid methods forde novoassembly of nanopore reads
- (2016) Ivan Sović et al. BIOINFORMATICS
- Fast and sensitive mapping of nanopore sequencing reads with GraphMap
- (2016) Ivan Sović et al. Nature Communications
- The Theory and Practice of Genome Sequence Assembly
- (2015) Jared T. Simpson et al. Annual Review of Genomics and Human Genetics
- Denoising DNA deep sequencing data—high-throughput sequencing errors and their correction
- (2015) David Laehnemann et al. BRIEFINGS IN BIOINFORMATICS
- Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome
- (2015) Sara Goodwin et al. GENOME RESEARCH
- Startups use short-read data to expand long-read sequencing market
- (2015) Michael Eisenstein NATURE BIOTECHNOLOGY
- Assembling large genomes with single-molecule sequencing and locality-sensitive hashing
- (2015) Konstantin Berlin et al. NATURE BIOTECHNOLOGY
- A complete bacterial genome assembled de novo using only nanopore sequencing data
- (2015) Nicholas J Loman et al. NATURE METHODS
- Improved data analysis for the MinION nanopore sequencer
- (2015) Miten Jain et al. NATURE METHODS
- Best practices in insect genome sequencing: what works and what doesn’t
- (2015) Stephen Richards et al. Current Opinion in Insect Science
- Resolving complex tandem repeats with long reads
- (2014) Ajay Ummat et al. BIOINFORMATICS
- Illumina TruSeq Synthetic Long-Reads Empower De Novo Assembly and Resolve Complex, Highly-Repetitive Transposable Elements
- (2014) Rajiv C. McCoy et al. PLoS One
- A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer
- (2014) Joshua Quick et al. GigaScience
- Error analysis of idealized nanopore sequencing
- (2013) Christopher R. O'Donnell et al. ELECTROPHORESIS
- Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
- (2013) Chen-Shan Chin et al. NATURE METHODS
- Characterizing and measuring bias in sequence data
- (2013) Michael G Ross et al. GENOME BIOLOGY
- PBSIM: PacBio reads simulator—toward accurate genome assembly
- (2012) Yukiteru Ono et al. BIOINFORMATICS
- Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory
- (2012) Mark J Chaisson et al. BMC BIOINFORMATICS
- Pacific biosciences sequencing technology for genotyping and variation discovery in human data
- (2012) Mauricio O Carneiro et al. BMC GENOMICS
- A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
- (2011) Guillaume Marçais et al. BIOINFORMATICS
- Repetitive DNA and next-generation sequencing: computational challenges and solutions
- (2011) Todd J. Treangen et al. NATURE REVIEWS GENETICS
- Limitations of next-generation genome sequence assembly
- (2010) Can Alkan et al. NATURE METHODS
- A flexible and efficient template format for circular consensus sequencing and SNP detection
- (2010) K. J. Travers et al. NUCLEIC ACIDS RESEARCH
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Single-nucleotide discrimination in immobilized DNA oligonucleotides with a biological nanopore
- (2009) D. Stoddart et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Rapid whole-genome mutational profiling using next-generation sequencing technologies
- (2008) D. R. Smith et al. GENOME RESEARCH
- Real-Time DNA Sequencing from Single Polymerase Molecules
- (2008) J. Eid et al. SCIENCE
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now