SV-Bay: structural variant detection in cancer genomes using a Bayesian approach with correction for GC-content and read mappability
Published 2016 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
SV-Bay: structural variant detection in cancer genomes using a Bayesian approach with correction for GC-content and read mappability
Authors
Keywords
-
Journal
BIOINFORMATICS
Volume 32, Issue 7, Pages 984-992
Publisher
Oxford University Press (OUP)
Online
2016-01-07
DOI
10.1093/bioinformatics/btv751
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Gustaf: Detecting and correctly classifying SVs in the NGS twilight zone
- (2014) K. Trappe et al. BIOINFORMATICS
- Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads
- (2014) Jan Schröder et al. BIOINFORMATICS
- Comprehensive characterization of complex structural variations in cancer by directly comparing genome sequence reads
- (2014) Valentí Moncunill et al. NATURE BIOTECHNOLOGY
- LUMPY: a probabilistic framework for structural variant discovery
- (2014) Ryan M Layer et al. GENOME BIOLOGY
- Diverse Mechanisms of Somatic Structural Variations in Human Cancer Genomes
- (2013) Lixing Yang et al. CELL
- PeSV-Fisher: Identification of Somatic and Non-Somatic Structural Variants Using Next Generation Sequencing Data
- (2013) Geòrgia Escaramís et al. PLoS One
- Breakpoint Features of Genomic Rearrangements in Neuroblastoma with Unbalanced Translocations and Chromothripsis
- (2013) Valentina Boeva et al. PLoS One
- PRISM: Pair-read informed split-read mapping for base-pair level detection of insertion, deletion and structural variants
- (2012) Yue Jiang et al. BIOINFORMATICS
- pIRS: Profile-based Illumina pair-end reads simulator
- (2012) Xuesong Hu et al. BIOINFORMATICS
- DELLY: structural variant discovery by integrated paired-end and split-read analysis
- (2012) T. Rausch et al. BIOINFORMATICS
- FUSE: a profit maximization approach for functional summarization of biological networks
- (2012) Boon-Siew Seah et al. BMC BIOINFORMATICS
- Summarizing and correcting the GC content bias in high-throughput sequencing
- (2012) Yuval Benjamini et al. NUCLEIC ACIDS RESEARCH
- An integrative probabilistic model for identification of structural variation in sequencing data
- (2012) Suzanne S Sindi et al. GENOME BIOLOGY
- Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data
- (2011) Valentina Boeva et al. BIOINFORMATICS
- Massive Genomic Rearrangement Acquired in a Single Catastrophic Event during Cancer Development
- (2011) Philip J. Stephens et al. CELL
- Discovery and genotyping of genome structural polymorphism by sequencing on a population scale
- (2011) Robert E Handsaker et al. NATURE GENETICS
- CREST maps somatic structural variation in cancer genomes with base-pair resolution
- (2011) Jianmin Wang et al. NATURE METHODS
- inGAP-sv: a novel scheme to identify and visualize structural variation from paired end mapping data
- (2011) Ji Qi et al. NUCLEIC ACIDS RESEARCH
- Enhanced structural variant and breakpoint detection using SVMerge by integration of multiple detection methods and local assembly
- (2011) Kim Wong et al. GENOME BIOLOGY
- Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery
- (2010) Fereydoun Hormozdiari et al. BIOINFORMATICS
- Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization
- (2010) Valentina Boeva et al. BIOINFORMATICS
- SVDetect: a tool to identify genomic structural variations from paired-end and mate-pair sequencing data
- (2010) Bruno Zeitouni et al. BIOINFORMATICS
- A geometric approach for classification and comparison of structural variants
- (2009) S. Sindi et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Sensitive and accurate detection of copy number variants using read depth of coverage
- (2009) S. Yoon et al. GENOME RESEARCH
- Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes
- (2009) F. Hormozdiari et al. GENOME RESEARCH
- A small-cell lung cancer genome with complex signatures of tobacco exposure
- (2009) Erin D. Pleasance et al. NATURE
- Complex landscapes of somatic rearrangement in human breast cancer genomes
- (2009) Philip J. Stephens et al. NATURE
- MoDIL: detecting small indels from clone-end sequencing with mixtures of distributions
- (2009) Seunghak Lee et al. NATURE METHODS
- Computational methods for discovering structural variation with next-generation sequencing
- (2009) Paul Medvedev et al. NATURE METHODS
- BreakDancer: an algorithm for high-resolution mapping of genomic structural variation
- (2009) Ken Chen et al. NATURE METHODS
- Genome Alteration Print (GAP): a tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays
- (2009) Tatiana Popova et al. GENOME BIOLOGY
- PEMer: a computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing data
- (2009) Jan O Korbel et al. GENOME BIOLOGY
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now