Article
Plant Sciences
D. Zumel, X. Dieguez, O. Werner, M. C. Moreno-Ortiz, J. Munoz, R. M. Ros
Summary: Endoreduplication, a common process in plants, is related to plastic responses to stress factors. This study investigated the level of endoreduplication in Ceratodon mosses and found higher endoreduplication index in the haploid cytotypes. The haploid cytotypes exhibited higher endoreduplication index during hot and dry periods, while the diploid cytotype showed no seasonal difference.
Article
Genetics & Heredity
Marianna Palova, Dajana Rucova, Michal Goga, Vladislav Kolarcik
Summary: Somatic polyploidy or endopolyploidy is common in the plant kingdom, with spatial and temporal differences observed in the distribution of endopolyploid cells in gametophytes and sporophytes among 11 selected moss species. Higher ploidy levels were seen in basal parts compared to apical parts, similar to patterns in angiosperms.
Article
Biochemistry & Molecular Biology
Nasim Rahmatpour, Neranjan Perera, Vijender Singh, Jill L. Wegrzyn, Bernard Goffinet
Summary: A new paradigm is emerging in the diversification of bryophytes, revealing the dynamic evolution of their genome with evidence of whole genome duplication events. Comparative transcriptome analysis of closely related species highlights significant gene sequence and gene number divergence, suggesting a strong genome evolution influenced by duplication events. The evolution of Funariaceae may be driven by the diversification of metabolic genes optimizing adaptations to environmental conditions, reflecting ecological patterns seen in seed plants.
MOLECULAR PHYLOGENETICS AND EVOLUTION
(2021)
Article
Biology
Viera Frakova, Lukas Koprivy, Marianna Palova, Vladislav Kolarcik, Pavol Martonfi
Summary: Endopolyploidy has appeared numerous times in angiosperms and is an important genetic feature in many plant species. It is generated through endoreduplication, where DNA replication occurs without chromosome separation and cytokinesis. Endopolyploidy plays a vital role in plant growth, development, and stress responses, with differences in endoreduplication levels observed in different organs and species within the Solanaceae family.
Article
Genetics & Heredity
Magdalena Senderowicz, Teresa Nowak, Magdalena Rojek-Jelonek, Maciej Bisaga, Laszlo Papp, Hanna Weiss-Schneeweiss, Bozena Kolano
Summary: The study on the evolution of karyotype and genome size in Crepis species revealed the presence of different base chromosome numbers and recurrent origins in different lineages. The increase in karyotype asymmetry accompanied karyotype evolution. The significant variation in genome sizes suggests that, besides changes in chromosome numbers, the amplification/elimination of repetitive DNAs may have played a role in genome and taxa differentiation within the genus.
Article
Infectious Diseases
Zohreh Fattahi, Marzieh Mohseni, Khadijeh Jalalvand, Fatemeh Aghakhani Moghadam, Azam Ghaziasadi, Fatemeh Keshavarzi, Jila Yavarian, Ali Jafarpour, Seyedeh Elham Mortazavi, Fatemeh Ghodratpour, Hanieh Behravan, Mohammad Khazeni, Seyed Amir Momeni, Issa Jahanzad, Abdolvahab Moradi, Alijan Tabarraei, Sadegh Ali Azimi, Ebrahim Kord, Seyed Mohammad Hashemi-Shahri, Azarakhsh Azaran, Farid Yousefi, Zakiye Mokhames, Alireza Soleimani, Shokouh Ghafari, Masood Ziaee, Shahram Habibzadeh, Farhad Jeddi, Azar Hadadi, Alireza Abdollahi, Gholam Abbas Kaydani, Saber Soltani, Talat Mokhtari-Azad, Reza Najafipour, Reza Malekzadeh, Kimia Kahrizi, Seyed Mohammad Jazayeri, Hossein Najmabadi
Summary: This study provided 50 whole-genome sequences of SARS-CoV-2 viral isolates from different geographical locations in Iran during March-July 2020. Analysis revealed at least two introductions of the virus into the country, leading to the dominance of B.4 lineage in the early epidemic followed by an increase in frequency of D614G mutation and B.1* lineages from mid-May onwards, indicating a rapid viral transmission that could lead to drastic changes in the circulating viral lineages in the country.
TRANSBOUNDARY AND EMERGING DISEASES
(2022)
Article
Genetics & Heredity
Guibing Hu, Junting Feng, Xu Xiang, Jiabao Wang, Jarkko Salojarvi, Chengming Liu, Zhenxian Wu, Jisen Zhang, Xinming Liang, Zide Jiang, Wei Liu, Liangxi Ou, Jiawei Li, Guangyi Fan, Yingxiao Mai, Chengjie Chen, Xingtan Zhang, Jiakun Zheng, Yanqing Zhang, Hongxiang Peng, Lixian Yao, Ching Man Wai, Xinping Luo, Jiaxin Fu, Haibao Tang, Tianying Lan, Biao Lai, Jinhua Sun, Yongzan Wei, Huanling Li, Jiezhen Chen, Xuming Huang, Qian Yan, Xin Liu, Leah K. McHale, William Rolling, Romain Guyot, David Sankoff, Chunfang Zheng, Victor A. Albert, Ray Ming, Houbin Chen, Rui Xia, Jianguo Li
Summary: By studying the genome of lychee, it was found that lychee had undergone two independent domestication events in Yunnan and Hainan, China. The maturity differences between early-maturing and late-maturing lychee cultivars may be regulated by gene deletions. This research is important for understanding the domestication history of lychee and improving lychee and related crops.
Article
Plant Sciences
Lucas Busta, Jessica M. Budke, Reinhard Jetter
Article
Biochemistry & Molecular Biology
Lucas Busta, Jessica M. Budke, Reinhard Jetter
Article
Plant Sciences
Aashish Ranjan, Jessica M. Budke, Steven D. Rowland, Daniel H. Chitwood, Ravi Kumar, Leonela Carriedo, Yasunori Ichihashi, Kristina Zumstein, Julin N. Maloof, Neelima R. Sinha
Article
Plant Sciences
Jessica M. Budke, Bernard Goffinet
FRONTIERS IN PLANT SCIENCE
(2016)
Editorial Material
Plant Sciences
Jessica M. Budke, Ernest C. Bernard, Dennis J. Gray, Sanna Huttunen, Birgit Piechulla, Robert N. Trigiano
CRITICAL REVIEWS IN PLANT SCIENCES
(2018)
Article
Plant Sciences
Jessica M. Budke, Bernard Goffinet, Cynthia S. Jones
Article
Biochemistry & Molecular Biology
Yang Liu, Laura L. Forrest, Jillian D. Bainard, Jessica M. Budke, Bernard Goffinet
MOLECULAR PHYLOGENETICS AND EVOLUTION
(2013)
Editorial Material
Biology
Benjamin Cain, Jessica M. Budke, Kelsey J. Wood, Neal T. Sweeney, Benjamin Schwessinger
Article
Plant Sciences
Hailee B. Korotkin, Rachel A. Swenie, Otto Miettinen, Jessica M. Budke, Ko-Hsuan Chen, Francois Lutzoni, Matthew E. Smith, P. Brandon Matheny
AMERICAN JOURNAL OF BOTANY
(2018)
Article
Plant Sciences
Jessica M. Budke
Article
Plant Sciences
Nikisha Patel, Susan Fawcett, Michael Sundue, Jessica M. Budke
INTERNATIONAL JOURNAL OF PLANT SCIENCES
(2019)
Article
Plant Sciences
Georgia R. Harrison, Laura M. Boggess, Jessica M. Budke, Michael D. Madritch
Summary: This study investigated the effects of rock-climbing on diversity, abundance, and composition of cliff-face vegetation. The results showed that unclimbed cliffs supported more diverse and different species than climbed cliffs. However, site variability was more important than climbing in differentiating cliff community composition.
APPLIED VEGETATION SCIENCE
(2022)
Article
Plant Sciences
Jessica R. Budke, Nikisha Patel, Mark D. GoFlag Consortium, Mark A. Wienhold, Maria Bruggeman-Nannenga
Summary: This study examines the taxonomically important morphological characters in the moss genus Fissidens using target-capture and Sanger sequencing techniques. The results show that these characters exhibit significant phylogenetic signal and correlations among different morphological characters and characters related to moisture habitat. These findings provide important insights into the morphological evolution and adaptation of mosses to different habitats.
JOURNAL OF SYSTEMATICS AND EVOLUTION
(2022)
Article
Plant Sciences
Alexandra S. Faidiga, Margaret G. Oliver, Jessica M. Budke, Susan Kalisz
Summary: Plant phenological shifts are highly affected by climate change, and this study focused on the southeastern United States, a biodiverse region with diverse abiotic conditions. Results showed that spring-flowering plant communities in different ecoregions exhibited varying sensitivity to temperature, with the Ridge and Valley region showing earlier flowering compared to the Blue Ridge region. However, there were no significant community-level shifts in flowering in recent decades, likely due to the predominant increase in summer temperatures rather than spring temperatures in the southeastern United States.
AMERICAN JOURNAL OF BOTANY
(2023)