Olea europaea L. Root Endophyte Bacillus velezensis OEE1 Counteracts Oomycete and Fungal Harmful Pathogens and Harbours a Large Repertoire of Secreted and Volatile Metabolites and Beneficial Functional Genes

Screening for Fusarium Antagonistic Bacteria From Contrasting Niches Designated the Endophyte Bacillus halotolerans as Plant Warden Against Fusarium

(2019) Houda Ben Slama et al.   Frontiers in Microbiology

Date Palm Trees Root-Derived Endophytes as Fungal Cell Factories for Diverse Bioactive Metabolites

(2018) Fedia Ben Mefteh et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Emergence of boscalid-resistant strains of Erysiphe necator in French vineyards

(2018) Semcheddine Cherrad et al.   MICROBIOLOGICAL RESEARCH

Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies

(2017)   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Mechanisms of action of plant growth promoting bacteria

(2017) Oluwaseyi Samuel Olanrewaju et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Mining the Volatilomes of Plant-Associated Microbiota for New Biocontrol Solutions

(2017) Aurélien Bailly et al.   Frontiers in Microbiology

Fungal Root Microbiome from Healthy and Brittle Leaf Diseased Date Palm Trees (Phoenix dactylifera L.) Reveals a Hidden Untapped Arsenal of Antibacterial and Broad Spectrum Antifungal Secondary Metabolites

(2017) Fedia B. Mefteh et al.   Frontiers in Microbiology

Comparative Genomics of Bacillus amyloliquefaciens Strains Reveals a Core Genome with Traits for Habitat Adaptation and a Secondary Metabolites Rich Accessory Genome

(2017) Lassaad Belbahri et al.   Frontiers in Microbiology

Increased Biological Activity of Aneurinibacillus migulanus Strains Correlates with the Production of New Gramicidin Secondary Metabolites

(2017) Faizah N. Alenezi et al.   Frontiers in Microbiology

Bacillus amyloliquefaciens, Bacillus velezensis, and Bacillus siamensis Form an “Operational Group B. amyloliquefaciens” within the B. subtilis Species Complex

(2017) Ben Fan et al.   Frontiers in Microbiology

Biocontrol activity of the endophytic Bacillus amyloliquefaciens strain CEIZ-11 against Pythium aphanidermatum and purification of its bioactive compounds

(2016) Imen Zouari et al.   BIOLOGICAL CONTROL

Bacillus velezensis is not a later heterotypic synonym of Bacillus amyloliquefaciens; Bacillus methylotrophicus, Bacillus amyloliquefaciens subsp. plantarum and ‘Bacillus oryzicola’ are later heterotypic synonyms of Bacillus velezensis based on phylogenomics

(2016) Christopher A. Dunlap et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

(2016) Minoru Kanehisa et al.   JOURNAL OF MOLECULAR BIOLOGY

Response of olive tree (Olea europaea L.cv. Chemlali) to infection with soilborne fungi

(2016) Rahma Trabelsi et al.   Journal of Plant Diseases and Protection

Strain-level diversity of secondary metabolism in the biocontrol species Aneurinibacillus migulanus

(2016) Faizah N. Alenezi et al.   MICROBIOLOGICAL RESEARCH

Volatile compounds emitted by diverse phytopathogenic microorganisms promote plant growth and flowering through cytokinin action

(2016) Ángela María Sánchez-López et al.   PLANT CELL AND ENVIRONMENT

BPGA- an ultra-fast pan-genome analysis pipeline

(2016) Narendrakumar M. Chaudhari et al.   Scientific Reports

Biological control of Dothistroma needle blight on pine with Aneurinibacillus migulanus

(2015) F. N. Alenezi et al.   FOREST PATHOLOGY

Cyclo(Phe-Pro) Produced by the Human Pathogen Vibrio vulnificus Inhibits Host Innate Immune Responses through the NF-κB Pathway

(2015) Kiwan Kim et al.   INFECTION AND IMMUNITY

antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters

(2015) Tilmann Weber et al.   NUCLEIC ACIDS RESEARCH

Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM)

(2015) Michael A. Skinnider et al.   NUCLEIC ACIDS RESEARCH

Population genetics ofPhytophthora infestansin Denmark reveals dominantly clonal populations and specific alleles linked to metalaxyl-M resistance

(2015) M. S. Montes et al.   PLANT PATHOLOGY

Genetic structure ofVerticillium dahliaeisolates infecting olive trees in Tunisia using AFLP, pathogenicity and PCR markers

(2015) Y. Gharbi et al.   PLANT PATHOLOGY

Bioemulsifiers are not biosurfactants and require different screening approaches

(2015) Chibuzo Uzoigwe et al.   Frontiers in Microbiology

Characterization of the core and accessory genomes of Pseudomonas aeruginosa using bioinformatic tools Spine and AGEnt

(2014) Egon A Ozer et al.   BMC GENOMICS

Automated Reconstruction of Whole-Genome Phylogenies from Short-Sequence Reads

(2014) Frederic Bertels et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phytophthora niederhauserii sp. nov., a polyphagous species associated with ornamentals, fruit trees and native plants in 13 countries

(2014) Z. Gloria Abad et al.   MYCOLOGIA

Molecular Profiling of the Phytophthora plurivora Secretome: A Step towards Understanding the Cross-Talk between Plant Pathogenic Oomycetes and Their Hosts

(2014) Valeria Severino et al.   PLoS One

Multiple barcode assessment within the Saprolegnia-Achlya clade (Saprolegniales, Oomycota, Straminipila) brings order in a neglected group of pathogens

(2014) Mónica M. Steciow et al.   IMA Fungus

Genome sequence-based species delimitation with confidence intervals and improved distance functions

(2013) Jan P Meier-Kolthoff et al.   BMC BIOINFORMATICS

Isolation and characterization of endophytic bacteria isolated from the leaves of the common bean (Phaseolus vulgaris)

(2013) Leonardo Emanuel de Oliveira Costa et al.   BRAZILIAN JOURNAL OF MICROBIOLOGY

Occurrence ofPhytophthoraRoot and Stem Rot of Kiwifruit in Turkey

(2013) İlker Kurbetli et al.   JOURNAL OF PHYTOPATHOLOGY

Purification of an antifungal compound, cyclo(l-Pro-d-Leu) for cereals produced by Bacillus cereus subsp. thuringiensis associated with entomopathogenic nematode

(2013) S. Nishanth Kumar et al.   MICROBIOLOGICAL RESEARCH

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

BAGEL3: automated identification of genes encoding bacteriocins and (non-)bactericidal posttranslationally modified peptides

(2013) Auke J. van Heel et al.   NUCLEIC ACIDS RESEARCH

Phytophthoradiversity and the population structure ofPhytophthora ramorumin Swiss ornamental nurseries

(2013) S. Prospero et al.   PLANT PATHOLOGY

Incipient loss of flagella in the genus Geolegnia: the emergence of a new clade within Leptolegnia ?

(2013) Mónica M. Steciow et al.   IMA Fungus

The Natural Product Domain Seeker NaPDoS: A Phylogeny Based Bioinformatic Tool to Classify Secondary Metabolite Gene Diversity

(2012) Nadine Ziemert et al.   PLoS One

Comparative Genomics of Plant-Associated Pseudomonas spp.: Insights into Diversity and Inheritance of Traits Involved in Multitrophic Interactions

(2012) Joyce E. Loper et al.   PLoS Genetics

SSU rRNA reveals major trends in oomycete evolution

(2011) Enrique Lara et al.   FUNGAL DIVERSITY

Automated genome mining for natural products

(2009) Michael HT Li et al.   BMC BIOINFORMATICS

Decolourization and detoxification of textile industry wastewater by the laccase-mediator system

(2009) Rim Khlifi et al.   JOURNAL OF HAZARDOUS MATERIALS

Fungal endophytes: diversity and functional roles

(2009) R. J. Rodriguez et al.   NEW PHYTOLOGIST

Shifting the genomic gold standard for the prokaryotic species definition

(2009) Michael Richter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative genomics: the bacterial pan-genome

(2008) Hervé Tettelin et al.   CURRENT OPINION IN MICROBIOLOGY

Stress tolerance in plants via habitat-adapted symbiosis

(2008) Rusty J Rodriguez et al.   ISME Journal

Biological Control of Phytopathogenic Fungi by Fatty Acids

(2008) Siyun Liu et al.   MYCOPATHOLOGIA

Multiple alienPhytophthorataxa discovered on diseased ornamental plants in Spain

(2008) E. Moralejo et al.   PLANT PATHOLOGY

Evolution of the cutinase gene family: Evidence for lateral gene transfer of a candidate Phytophthora virulence factor

(2007) Lassaad Belbahri et al.   GENE