Site-Specific Microbial Decomposer Communities Do Not Imply Faster Decomposition: Results from a Litter Transplantation Experiment

The role of microbial community in the decomposition of leaf litter and deadwood

(2018) Alessia Bani et al.   APPLIED SOIL ECOLOGY

Bacterial communities of decaying Norway spruce follow distinct slope exposure and time-dependent trajectories

(2018) M Probst et al.   ENVIRONMENTAL MICROBIOLOGY

Community fingerprinting reveals increasing wood-inhabiting fungal diversity in unmanaged Mediterranean forests

(2018) Silvia Pioli et al.   FOREST ECOLOGY AND MANAGEMENT

Fungal communities influence decomposition rates of plant litter from two dominant tree species

(2018) Johan Asplund et al.   Fungal Ecology

Microbial Decomposer Dynamics: Diversity and Functionality Investigated through a Transplantation Experiment in Boreal Forests

(2018) Alessia Bani et al.   MICROBIAL ECOLOGY

Are leaf litter and microbes team players? Interpreting home-field advantage decomposition dynamics

(2018) Julia E. Palozzi et al.   SOIL BIOLOGY & BIOCHEMISTRY

Effects of slope exposure on soil physico-chemical and microbiological properties along an altitudinal climosequence in the Italian Alps

(2017) Tommaso Bardelli et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Soil microbial communities along the route of a venturous cycling trip

(2016) Magdalena Nagler et al.   APPLIED SOIL ECOLOGY

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Life in leaf litter: novel insights into community dynamics of bacteria and fungi during litter decomposition

(2016) Witoon Purahong et al.   MOLECULAR ECOLOGY

boral - Bayesian Ordination and Regression Analysis of Multivariate Abundance Data in r

(2016) Francis K.C. Hui   Methods in Ecology and Evolution

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Cellulose and hemicellulose decomposition by forest soil bacteria proceeds by the action of structurally variable enzymatic systems

(2016) Rubén López-Mondéjar et al.   Scientific Reports

Environmental factors and traits that drive plant litter decomposition do not determine home-field advantage effects

(2015) G. F. Ciska Veen et al.   FUNCTIONAL ECOLOGY

A widespread plant-fungal-bacterial symbiosis promotes plant biodiversity, plant nutrition and seedling recruitment

(2015) Marcel GA van der Heijden et al.   ISME Journal

Effects of Forest Management Practices in Temperate Beech Forests on Bacterial and Fungal Communities Involved in Leaf Litter Degradation

(2015) Witoon Purahong et al.   MICROBIAL ECOLOGY

The bacterial community inhabiting temperate deciduous forests is vertically stratified and undergoes seasonal dynamics

(2015) Rubén López-Mondéjar et al.   SOIL BIOLOGY & BIOCHEMISTRY

Validating tree litter decomposition in the Yasso07 carbon model

(2014) M. Didion et al.   ECOLOGICAL MODELLING

Relocation, high-latitude warming and host genetic identity shape the foliar fungal microbiome of poplars

(2014) Miklós Bálint et al.   MOLECULAR ECOLOGY

Litter quality and environmental controls of home-field advantage effects on litter decomposition

(2014) G. F. Ciska Veen et al.   OIKOS

Comparison and Validation of Some ITS Primer Pairs Useful for Fungal Metabarcoding Studies

(2014) Michiel Op De Beeck et al.   PLoS One

Endemism and functional convergence across the North American soil mycobiome

(2014) J. M. Talbot et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Uncoupling of microbial community structure and function in decomposing litter across beech forest ecosystems in Central Europe

(2014) Witoon Purahong et al.   Scientific Reports

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

BayesHammer: Bayesian clustering for error correction in single-cell sequencing

(2013) Sergey I Nikolenko et al.   BMC GENOMICS

Tree species influence on microbial communities in litter and soil: Current knowledge and research needs

(2013) Cindy E. Prescott et al.   FOREST ECOLOGY AND MANAGEMENT

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Seasonal dynamics of fungal communities in a temperate oak forest soil

(2013) Jana Voříšková et al.   NEW PHYTOLOGIST

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Highly consistent effects of plant litter identity and functional traits on decomposition across a latitudinal gradient

(2012) Marika Makkonen et al.   ECOLOGY LETTERS

Tree Species Effect on Litter Decomposition and Nutrient Release in Mediterranean Oak Forests Changes Over Time

(2012) Cristina Aponte et al.   ECOSYSTEMS

Cellulose utilization in forest litter and soil: identification of bacterial and fungal decomposers

(2012) Martina Štursová et al.   FEMS MICROBIOLOGY ECOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

mvabund- anRpackage for model-based analysis of multivariate abundance data

(2012) Yi Wang et al.   Methods in Ecology and Evolution

Do assembly history effects attenuate from species to ecosystem properties? A field test with wood-inhabiting fungi

(2011) Ian A. Dickie et al.   ECOLOGY LETTERS

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

(2011) Daniel PR Herlemann et al.   ISME Journal

Environmental distribution of prokaryotic taxa

(2010) Javier Tamames et al.   BMC MICROBIOLOGY

Stoichiometric controls on carbon, nitrogen, and phosphorus dynamics in decomposing litter

(2010) Stefano Manzoni et al.   ECOLOGICAL MONOGRAPHS

Modeling species co-occurrence by multivariate logistic regression generates new hypotheses on fungal interactions

(2010) Otso Ovaskainen et al.   ECOLOGY

Feasibility of Removing Surface Deposits on Stone Using Biological and Chemical Remediation Methods

(2010) A. Polo et al.   MICROBIAL ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Home-field advantage accelerates leaf litter decomposition in forests

(2009) Edward Ayres et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial communities and their relevance for ecosystem models: Decomposition as a case study

(2009) Krista L. McGuire et al.   SOIL BIOLOGY & BIOCHEMISTRY

Tree species identity alters forest litter decomposition through long-term plant and soil interactions in Patagonia, Argentina

(2008) Lucía Vivanco et al.   JOURNAL OF ECOLOGY