Proteomic Insights into Phycobilisome Degradation, A Selective and Tightly Controlled Process in The Fast-Growing Cyanobacterium Synechococcus elongatus UTEX 2973

A photocleavable surfactant for top-down proteomics

(2019) Kyle A. Brown et al.   NATURE METHODS

Identification and Quantification of Proteoforms by Mass Spectrometry

(2019) Leah V. Schaffer et al.   PROTEOMICS

Different roles for ApcD and ApcF in Synechococcus elongatus and Synechocystis sp. PCC 6803 phycobilisomes

(2019) Pablo I. Calzadilla et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Chlorosis as a developmental program in cyanobacteria: the proteomic fundament for survival and awakening

(2018) Philipp Spät et al.   MOLECULAR & CELLULAR PROTEOMICS

Adjustments to Photosystem Stoichiometry and Electron Transfer Proteins Are Key to the Remarkably Fast Growth of the Cyanobacterium Synechococcus elongatus UTEX 2973

(2018) Justin Ungerer et al.   mBio

Nitrogen chlorosis in unicellular cyanobacteria - a developmental program for surviving nitrogen deprivation

(2018) Karl Forchhammer et al.   ENVIRONMENTAL MICROBIOLOGY

The PRIDE database and related tools and resources in 2019: improving support for quantification data

(2018) Yasset Perez-Riverol et al.   NUCLEIC ACIDS RESEARCH

Comparative genomics reveals the molecular determinants of rapid growth of the cyanobacterium Synechococcus elongatus UTEX 2973

(2018) Justin Ungerer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Elucidating Escherichia coli Proteoform Families Using Intact-Mass Proteomics and a Global PTM Discovery Database

(2017) Yunxiang Dai et al.   JOURNAL OF PROTEOME RESEARCH

Structure of phycobilisome from the red alga Griffithsia pacifica

(2017) Jun Zhang et al.   NATURE

Top-down characterization of endogenous protein complexes with native proteomics

(2017) Owen S Skinner et al.   Nature Chemical Biology

Informed-Proteomics: open-source software package for top-down proteomics

(2017) Jungkap Park et al.   NATURE METHODS

Quantitative proteomics: challenges and opportunities in basic and applied research

(2017) Olga T Schubert et al.   Nature Protocols

The proteolysis adaptor, NblA, binds to the N-terminus of β-phycocyanin: Implications for the mechanism of phycobilisome degradation

(2017) Amelia Y. Nguyen et al.   PHOTOSYNTHESIS RESEARCH

Population-level coordination of pigment response in individual cyanobacterial cells under altered nitrogen levels

(2017) Jaclyn Murton et al.   PHOTOSYNTHESIS RESEARCH

Progress in Top-Down Proteomics and the Analysis of Proteoforms

(2016) Timothy K. Toby et al.   Annual Review of Analytical Chemistry

Cyanobacterial high-light-inducible proteins — Protectors of chlorophyll–protein synthesis and assembly

(2016) Josef Komenda et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

TopPIC: a software tool for top-down mass spectrometry-based proteoform identification and characterization

(2016) Qiang Kou et al.   BIOINFORMATICS

Quantitative Proteomic Analysis of Histone Modifications

(2015) He Huang et al.   CHEMICAL REVIEWS

Synechococcus elongatus UTEX 2973, a fast growing cyanobacterial chassis for biosynthesis using light and CO2

(2015) Jingjie Yu et al.   Scientific Reports

Phosphoproteome of the cyanobacterium Synechocystis sp. PCC 6803 and its dynamics during nitrogen starvation

(2015) Philipp Spät et al.   Frontiers in Microbiology

Applying Label-Free Quantitation to Top Down Proteomics

(2014) Ioanna Ntai et al.   ANALYTICAL CHEMISTRY

Degradation of Phycobilisomes inSynechocystissp. PCC6803

(2014) Antje Baier et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Isobaric Labeling-Based Relative Quantification in Shotgun Proteomics

(2014) Navin Rauniyar et al.   JOURNAL OF PROTEOME RESEARCH

Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ

(2014) Jürgen Cox et al.   MOLECULAR & CELLULAR PROTEOMICS

Targeted Quantification of Low ng/mL Level Proteins in Human Serum without Immunoaffinity Depletion

(2013) Tujin Shi et al.   JOURNAL OF PROTEOME RESEARCH

Advancing the sensitivity of selected reaction monitoring-based targeted quantitative proteomics

(2012) Tujin Shi et al.   PROTEOMICS

Top-Down Quantitative Proteomics Identified Phosphorylation of Cardiac Troponin I as a Candidate Biomarker for Chronic Heart Failure

(2011) Jiang Zhang et al.   JOURNAL OF PROTEOME RESEARCH

Protein Identification Using Top-Down Spectra

(2011) Xiaowen Liu et al.   MOLECULAR & CELLULAR PROTEOMICS

CONSeQuence: Prediction of Reference Peptides for Absolute Quantitative Proteomics Using Consensus Machine Learning Approaches

(2011) Claire E. Eyers et al.   MOLECULAR & CELLULAR PROTEOMICS

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

(2010) Brendan MacLean et al.   BIOINFORMATICS

The c-di-GMP Binding Protein YcgR Controls Flagellar Motor Direction and Speed to Affect Chemotaxis by a “Backstop Brake” Mechanism

(2010) Koushik Paul et al.   MOLECULAR CELL

Structural organisation of phycobilisomes from Synechocystis sp. strain PCC6803 and their interaction with the membrane

(2009) Ana A. Arteni et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Prediction of high-responding peptides for targeted protein assays by mass spectrometry

(2009) Vincent A Fusaro et al.   NATURE BIOTECHNOLOGY

Biogenesis of Phycobiliproteins

(2008) Gaozhong Shen et al.   JOURNAL OF BIOLOGICAL CHEMISTRY