Graph Convolutional Network and Convolutional Neural Network Based Method for Predicting lncRNA-Disease Associations

TriPepSVM: de novo prediction of RNA-binding proteins based on short amino acid motifs

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pysster: classification of biological sequences by learning sequence and structure motifs with convolutional neural networks

(2018) Stefan Budach et al.   BIOINFORMATICS

Prediction of lncRNA–disease associations based on inductive matrix completion

(2018) Chengqian Lu et al.   BIOINFORMATICS

Modeling polypharmacy side effects with graph convolutional networks

(2018) Marinka Zitnik et al.   BIOINFORMATICS

DincRNA: a comprehensive web-based bioinformatics toolkit for exploring disease associations and ncRNA function

(2018) Liang Cheng et al.   BIOINFORMATICS

A Novel Method for LncRNA-Disease Association Prediction Based on an lncRNA-disease Association Network

(2018) pengyao ping et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

LPGNMF: Predicting Long Non-coding RNA and Protein Interaction Using Graph Regularized Nonnegative Matrix Factorization

(2018) Tianyi Zhang et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

ssHMM: extracting intuitive sequence-structure motifs from high-throughput RNA-binding protein data

(2017) David Heller et al.   NUCLEIC ACIDS RESEARCH

Global network random walk for predicting potential human lncRNA-disease associations

(2017) Changlong Gu et al.   Scientific Reports

Global Prioritizing Disease Candidate lncRNAs via a Multi-level Composite Network

(2017) Qianlan Yao et al.   Scientific Reports

A deep ensemble model to predict miRNA-disease association

(2017) Laiyi Fu et al.   Scientific Reports

Applications of Deep Learning in Biomedicine

(2016) Polina Mamoshina et al.   MOLECULAR PHARMACEUTICS

miR-17-92 host gene, uderexpressed in gastric cancer and its expression was negatively correlated with the metastasis

(2015) P Nikpour et al.   INDIAN JOURNAL OF CANCER

Lnc2Cancer: a manually curated database of experimentally supported lncRNAs associated with various human cancers

(2015) Shangwei Ning et al.   NUCLEIC ACIDS RESEARCH

Constructing lncRNA functional similarity network based on lncRNA-disease associations and disease semantic similarity

(2015) Xing Chen et al.   Scientific Reports

miR-17-92 host gene, uderexpressed in gastric cancer and its expression was negatively correlated with the metastasis

(2015) P Nikpour et al.   INDIAN JOURNAL OF CANCER

Genetic variation in the non-coding genome: Involvement of micro-RNAs and long non-coding RNAs in disease

(2014) Barbara Hrdlickova et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

Protein fold recognition using geometric kernel data fusion

(2014) Pooya Zakeri et al.   BIOINFORMATICS

Inferring novel lncRNA–disease associations based on a random walk model of a lncRNA functional similarity network

(2014) Jie Sun et al.   Molecular BioSystems

A bioinformatics method for predicting long noncoding RNAs associated with vascular disease

(2014) JianWei Li et al.   Science China-Life Sciences

Novel human lncRNA–disease association inference based on lncRNA expression profiles

(2013) Xing Chen et al.   BIOINFORMATICS

starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data

(2013) Jun-Hao Li et al.   NUCLEIC ACIDS RESEARCH

HMDD v2.0: a database for experimentally supported human microRNA and disease associations

(2013) Yang Li et al.   NUCLEIC ACIDS RESEARCH

GENCODE: The reference human genome annotation for The ENCODE Project

(2012) J. Harrow et al.   GENOME RESEARCH

LncRNADisease: a database for long-non-coding RNA-associated diseases

(2012) Geng Chen et al.   NUCLEIC ACIDS RESEARCH

Genetic variants at the 9p21 locus contribute to atherosclerosis through modulation of ANRIL and CDKN2A/B

(2011) Ada Congrains et al.   ATHEROSCLEROSIS

Long non-coding RNAs in Huntington's disease neurodegeneration

(2011) Rory Johnson   NEUROBIOLOGY OF DISEASE

Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases

(2010) Dong Wang et al.   BIOINFORMATICS

Characterization of BCAR4, a novel oncogene causing endocrine resistance in human breast cancer cells

(2010) Marcia Godinho et al.   JOURNAL OF CELLULAR PHYSIOLOGY

Non-coding RNAs: regulators of disease

(2009) Ryan J Taft et al.   JOURNAL OF PATHOLOGY