Gastric Normal Adjacent Mucosa Versus Healthy and Cancer Tissues: Distinctive Transcriptomic Profiles and Biological Features

Unifying cancer and normal RNA sequencing data from different sources

(2018) Qingguo Wang et al.   Scientific Data

New approach for understanding genome variations in KEGG

(2018) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

mRNA expression of steroidogenic enzymes, steroid hormone receptors and their coregulators in gastric cancer

(2017) Bartosz Adam Frycz et al.   Oncology Letters

Comprehensive analysis of normal adjacent to tumor transcriptomes

(2017) Dvir Aran et al.   Nature Communications

Hypothesis: solid tumours behave as systemic metabolic dictators

(2016) Yang-Ming Lee et al.   JOURNAL OF CELLULAR AND MOLECULAR MEDICINE

The challenge of screening for early gastric cancer in China

(2016) Liang Zong et al.   LANCET

Gastric cancer

(2016) Eric Van Cutsem et al.   LANCET

Alternative preprocessing of RNA-Sequencing data in The Cancer Genome Atlas leads to improved analysis results

(2015) Mumtahena Rahman et al.   BIOINFORMATICS

TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data

(2015) Antonio Colaprico et al.   NUCLEIC ACIDS RESEARCH

The Molecular Signatures Database Hallmark Gene Set Collection

(2015) Arthur Liberzon et al.   Cell Systems

Tumor Intrinsic Subtype Is Reflected in Cancer-Adjacent Tissue

(2014) P. Casbas-Hernandez et al.   CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

Aberrant gene expression in mucosa adjacent to tumor reveals a molecular crosstalk in colon cancer

(2014) Rebeca Sanz-Pamplona et al.   Molecular Cancer

Normalization of RNA-seq data using factor analysis of control genes or samples

(2014) Davide Risso et al.   NATURE BIOTECHNOLOGY

Robustly detecting differential expression in RNA sequencing data using observation weights

(2014) Xiaobei Zhou et al.   NUCLEIC ACIDS RESEARCH

ArrayExpress update—simplifying data submissions

(2014) Nikolay Kolesnikov et al.   NUCLEIC ACIDS RESEARCH

Denervation suppresses gastric tumorigenesis

(2014) C.-M. Zhao et al.   Science Translational Medicine

Pathview: an R/Bioconductor package for pathway-based data integration and visualization

(2013) Weijun Luo et al.   BIOINFORMATICS

GSVA: gene set variation analysis for microarray and RNA-Seq data

(2013) Sonja Hänzelmann et al.   BMC BIOINFORMATICS

The Genotype-Tissue Expression (GTEx) project

(2013) John Lonsdale et al.   NATURE GENETICS

Human housekeeping genes, revisited

(2013) Eli Eisenberg et al.   TRENDS IN GENETICS

Expression profile and prognostic role of sex hormone receptors in gastric cancer

(2012) Lu Gan et al.   BMC CANCER

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

GC-Content Normalization for RNA-Seq Data

(2011) Davide Risso et al.   BMC BIOINFORMATICS

Clinicopathological and prognostic significance of serum and tissue Dickkopf-1 levels in human hepatocellular carcinoma

(2011) Edmund Kwok-Kwan Tung et al.   LIVER INTERNATIONAL

Optimal Deconvolution of Transcriptional Profiling Data Using Quadratic Programming with Application to Complex Clinical Blood Samples

(2011) Ting Gong et al.   PLoS One

Gene Expression Profiles of Estrogen Receptor-Positive and Estrogen Receptor-Negative Breast Cancers Are Detectable in Histologically Normal Breast Epithelium

(2010) K. Graham et al.   CLINICAL CANCER RESEARCH

Markers of fibrosis and epithelial to mesenchymal transition demonstrate field cancerization in histologically normal tissue adjacent to breast tumors

(2010) Kristina A. Trujillo et al.   INTERNATIONAL JOURNAL OF CANCER

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Mammary field cancerization: molecular evidence and clinical importance

(2009) Christopher M. Heaphy et al.   BREAST CANCER RESEARCH AND TREATMENT

Activation of Host Wound Responses in Breast Cancer Microenvironment

(2009) M. A. Troester et al.   CLINICAL CANCER RESEARCH

Cytochrome P450 aromatase gene (CYP19) expression in gastric cancer

(2008) Masao Izawa et al.   Gastric Cancer