Identification of a Shared Microbiomic and Metabolomic Profile in Systemic Autoimmune Diseases

Clinical significance of myositis-specific autoantibody profiles in Japanese patients with polymyositis/dermatomyositis

(2019) Jumpei Temmoku et al.   MEDICINE

Microbial and metabolic multi-omic correlations in systemic sclerosis patients

(2018) Chiara Bellocchi et al.   Annals of the New York Academy of Sciences

LC-MS-based serum metabolomics reveals a distinctive signature in patients with rheumatoid arthritis

(2018) Ju Li et al.   CLINICAL RHEUMATOLOGY

Translocation of a gut pathobiont drives autoimmunity in mice and humans

(2018) S. Manfredo Vieira et al.   SCIENCE

Intestinal Microbiota Influences Non-intestinal Related Autoimmune Diseases

(2018) Maria C. Opazo et al.   Frontiers in Microbiology

A serum nuclear magnetic resonance-based metabolomic signature of antiphospholipid syndrome

(2017) Angelica Palisi et al.   JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS

The shared and specific mechanism of four autoimmune diseases

(2017) Meiwei Luan et al.   Oncotarget

Intestinal Dysbiosis Is Associated with Altered Short-Chain Fatty Acids and Serum-Free Fatty Acids in Systemic Lupus Erythematosus

(2017) Javier Rodríguez-Carrio et al.   Frontiers in Immunology

High frequency of intestinal T H 17 cells correlates with microbiota alterations and disease activity in multiple sclerosis

(2017) Ilaria Cosorich et al.   Science Advances

Colonic Butyrate-Producing Communities in Humans: an Overview Using Omics Data

(2017) Marius Vital et al.   mSystems

Antibiotics ameliorate lupus-like symptoms in mice

(2017) Qinghui Mu et al.   Scientific Reports

Raw meat based diet influences faecal microbiome and end products of fermentation in healthy dogs

(2016) Misa Sandri et al.   BMC Veterinary Research

Butyrate attenuates lipolysis in adipocytes co-cultured with macrophages through non-prostaglandin E2–mediated and prostaglandin E2–mediated pathways

(2016) Hideo Ohira et al.   Lipids in Health and Disease

The microbiome-systemic diseases connection

(2016) TA van der Meulen et al.   ORAL DISEASES

Metabolic Profiling of Systemic Lupus Erythematosus and Comparison with Primary Sjögren’s Syndrome and Systemic Sclerosis

(2016) Anders A. Bengtsson et al.   PLoS One

An expansion of rare lineage intestinal microbes characterizes rheumatoid arthritis

(2016) Jun Chen et al.   Genome Medicine

RNA-seq Analysis Reveals Unique Transcriptome Signatures in Systemic Lupus Erythematosus Patients with Distinct Autoantibody Specificities

(2016) Richa Rai et al.   PLoS One

Metabolite and Lipid Profiling of Biobank Plasma Samples Collected Prior to Onset of Rheumatoid Arthritis

(2016) Izabella Surowiec et al.   PLoS One

Altered Mucosal Microbiome Diversity and Disease Severity in Sjögren Syndrome

(2016) Cintia S. de Paiva et al.   Scientific Reports

Th17 responses and natural IgM antibodies are related to gut microbiota composition in systemic lupus erythematosus patients

(2016) Patricia López et al.   Scientific Reports

Metabolomics analysis of saliva from patients with primary Sjögren's syndrome

(2015) G. Kageyama et al.   CLINICAL AND EXPERIMENTAL IMMUNOLOGY

The gut microbiome in autoimmunity: Sex matters

(2015) Andres Gomez et al.   CLINICAL IMMUNOLOGY

Sequencing and beyond: integrating molecular 'omics' for microbial community profiling

(2015) Eric A. Franzosa et al.   NATURE REVIEWS MICROBIOLOGY

The Treatment-Naive Microbiome in New-Onset Crohn’s Disease

(2014) Dirk Gevers et al.   Cell Host & Microbe

MHC associations with clinical and autoantibody manifestations in European SLE

(2014) D L Morris et al.   GENES AND IMMUNITY

A Phylogenomic View of Ecological Specialization in the Lachnospiraceae, a Family of Digestive Tract-Associated Bacteria

(2014) Conor J. Meehan et al.   Genome Biology and Evolution

Lipolysis meets inflammation: arachidonic acid mobilization from fat

(2014) Renate Schreiber et al.   JOURNAL OF LIPID RESEARCH

Carnitine metabolism to trimethylamine by an unusual Rieske-type oxygenase from human microbiota

(2014) Y. Zhu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Role of the Gut Microbiota in the Pathogenesis of Antiphospholipid Syndrome

(2014) William E. Ruff et al.   Current Rheumatology Reports

Eisenbergiella tayi gen. nov., sp. nov., isolated from human blood

(2013) I. Amir et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Increased Proportions of Bifidobacterium and the Lactobacillus Group and Loss of Butyrate-Producing Bacteria in Inflammatory Bowel Disease

(2013) W. Wang et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Intestinal microbiota metabolism of l-carnitine, a nutrient in red meat, promotes atherosclerosis

(2013) Robert A Koeth et al.   NATURE MEDICINE

Assessing the Fecal Microbiota: An Optimized Ion Torrent 16S rRNA Gene-Based Analysis Protocol

(2013) Christian Milani et al.   PLoS One

The Microbial Metabolites, Short-Chain Fatty Acids, Regulate Colonic Treg Cell Homeostasis

(2013) P. M. Smith et al.   SCIENCE

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Metabolic Disturbances Associated with Systemic Lupus Erythematosus

(2012) Tianfu Wu et al.   PLoS One

Undifferentiated connective tissue diseases (UCTD): Simplified systemic autoimmune diseases

(2010) Marta Mosca et al.   AUTOIMMUNITY REVIEWS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

The Sensing of Environmental Stimuli by Follicular Dendritic Cells Promotes Immunoglobulin A Generation in the Gut

(2010) Keiichiro Suzuki et al.   IMMUNITY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Inducible Foxp3+ regulatory T-cell development by a commensal bacterium of the intestinal microbiota

(2010) J. L. Round et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns

(2010) M. G. Dominguez-Bello et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Investigation of Human Blood Plasma Sample Preparation for Performing Metabolomics Using Ultrahigh Performance Liquid Chromatography/Mass Spectrometry

(2009) Stephen J. Bruce et al.   ANALYTICAL CHEMISTRY

Gut flora, Toll-like receptors and nuclear receptors: a tripartite communication that tunes innate immunity in large intestine

(2008) Annelie Lundin et al.   CELLULAR MICROBIOLOGY

Cloacibacillus evryensis gen. nov., sp. nov., a novel asaccharolytic, mesophilic, amino-acid-degrading bacterium within the phylum 'Synergistetes', isolated from an anaerobic sludge digester

(2008) A. Ganesan et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY