Viral Sequences Detection by High-Throughput Sequencing in Cerebrospinal Fluid of Individuals with and without Central Nervous System Disease

High-throughput sequencing for the aetiologic identification of viral encephalitis, meningoencephalitis and meningitis. A narrative review and clinical appraisal

(2019) Marie-Céline Zanella et al.   CLINICAL MICROBIOLOGY AND INFECTION

Contaminating viral sequences in high-throughput sequencing viromics: a linkage study of 700 sequencing libraries

(2019) Maria Asplund et al.   CLINICAL MICROBIOLOGY AND INFECTION

Clinical Metagenomic Sequencing for Diagnosis of Meningitis and Encephalitis

(2019) Michael R. Wilson et al.   NEW ENGLAND JOURNAL OF MEDICINE

Antibody-Mediated Encephalitis

(2018) Josep Dalmau et al.   NEW ENGLAND JOURNAL OF MEDICINE

Detection of novel astroviruses MLB1 and MLB2 in the sera of febrile Tanzanian children

(2018) Samuel Cordey et al.   Emerging Microbes & Infections

Investigation of the Plasma Virome from Cases of Unexplained Febrile Illness in Tanzania from 2013 to 2014: a Comparative Analysis between Unbiased and VirCapSeq-VERT High-Throughput Sequencing Approaches

(2018) Simon H. Williams et al.   mSphere

Human pegivirus-1 in the CSF of patients with HIV-associated neurocognitive disorder (HAND) may be derived from blood in highly viraemic patients

(2017) Diana Hardie et al.   JOURNAL OF CLINICAL VIROLOGY

Droplet digital PCR (ddPCR) vs quantitative real-time PCR (qPCR) approach for detection and quantification of Merkel cell polyomavirus (MCPyV) DNA in formalin fixed paraffin embedded (FFPE) cutaneous biopsies

(2017) Rosaria Arvia et al.   JOURNAL OF VIROLOGICAL METHODS

Epidemiology of infectious encephalitis causes in 2016

(2017) A. Boucher et al.   MEDECINE ET MALADIES INFECTIEUSES

Quality filtering of Illumina index reads mitigates sample cross-talk

(2016) Erik Scott Wright et al.   BMC GENOMICS

Multicenter Evaluation of BioFire FilmArray Meningitis/Encephalitis Panel for Detection of Bacteria, Viruses, and Yeast in Cerebrospinal Fluid Specimens

(2016) Amy L. Leber et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Torque teno virus in patients undergoing allogeneic hematopoietic stem cell transplantation for hematological malignancies

(2015) S Masouridi-Levrat et al.   BONE MARROW TRANSPLANTATION

Toscana virus meningitis case in Switzerland: an example of the ezVIR bioinformatics pipeline utility for the identification of emerging viruses

(2015) S. Cordey et al.   CLINICAL MICROBIOLOGY AND INFECTION

Detection of GB virus C genomic sequence in the cerebrospinal fluid of a HIV-infected patient in China: a case report and literature review

(2015) Z. LIU et al.   EPIDEMIOLOGY AND INFECTION

Detection of Merkel cell polyomavirus large T-antigen sequences in human central nervous system tumors

(2015) Farzin Sadeghi et al.   JOURNAL OF MEDICAL VIROLOGY

Small circular single stranded DNA viral genomes in unexplained cases of human encephalitis, diarrhea, and in untreated sewage

(2015) Tung Gia Phan et al.   VIROLOGY

A novel gemycircularvirus in an unexplained case of child encephalitis

(2015) Chenglin Zhou et al.   Virology Journal

Viral diseases of the central nervous system

(2015) Phillip A Swanson et al.   Current Opinion in Virology

Comprehensive Human Virus Screening Using High-Throughput Sequencing with a User-Friendly Representation of Bioinformatics Analysis: a Pilot Study

(2014) Tom J. Petty et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Human pegivirus RNA is found in multiple blood mononuclear cells in vivo and serum-derived viral RNA-containing particles are infectious in vitro

(2014) E. T. Chivero et al.   JOURNAL OF GENERAL VIROLOGY

Case Definitions, Diagnostic Algorithms, and Priorities in Encephalitis: Consensus Statement of the International Encephalitis Consortium

(2013) A. Venkatesan et al.   CLINICAL INFECTIOUS DISEASES

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Deep Sequencing for the Detection of Virus-Like Sequences in the Brains of Patients with Multiple Sclerosis: Detection of GBV-C in Human Brain

(2012) John D. Kriesel et al.   PLoS One

Survey for the presence of BK, JC, KI, WU and Merkel cell polyomaviruses in human brain tissues

(2010) W.Y. Lam et al.   JOURNAL OF CLINICAL VIROLOGY

Causes of encephalitis and differences in their clinical presentations in England: a multicentre, population-based prospective study

(2010) Julia Granerod et al.   LANCET INFECTIOUS DISEASES

Human anelloviruses and the central nervous system

(2010) Fabrizio Maggi et al.   REVIEWS IN MEDICAL VIROLOGY

Detection of Adenoviruses and Rotaviruses in Drinking Water Sources Used In Rural Areas of Benin, West Africa

(2009) J. Verheyen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Infectious Encephalitis in France in 2007: A National Prospective Study

(2009) Alexandra Mailles et al.   CLINICAL INFECTIOUS DISEASES

DNA from KI, WU and Merkel Cell Polyomaviruses Is Not Detected in Childhood Central Nervous System Tumours or Neuroblastomas

(2009) Géraldine Giraud et al.   PLoS One