Joint RNA-Seq and miRNA Profiling Analyses to Reveal Molecular Mechanisms in Regulating Thickness of Pod Canopy in Brassica napus

Using microRNA Networks to Understand Cancer

(2018) Mihnea Dragomir et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Sulfonamide inhibition studies of two β-carbonic anhydrases from the ascomycete fungus Sordaria macrospora, CAS1 and CAS2

(2018) Daniela Vullo et al.   JOURNAL OF ENZYME INHIBITION AND MEDICINAL CHEMISTRY

MicroRNA166 Modulates Cadmium Tolerance and Accumulation in Rice

(2018) Yanfei Ding et al.   PLANT PHYSIOLOGY

Rice nitrate transporter OsNPF7.2 positively regulates tiller number and grain yield

(2018) Jie Wang et al.   Rice

Identification of genes related to floral organ development in pak choi by expression profiling

(2017) H.X. Song et al.   GENETICS AND MOLECULAR RESEARCH

Integrative RNA- and miRNA-Profile Analysis Reveals a Likely Role of BR and Auxin Signaling in Branch Angle Regulation of B. napus

(2017) Hongtao Cheng et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

qPrimerDB: a thermodynamics-based gene-specific qPCR primer database for 147 organisms

(2017) Kun Lu et al.   NUCLEIC ACIDS RESEARCH

Analysis of transcriptional and epigenetic changes in hybrid vigor of allopolyploid Brassica napus uncovers key roles for small RNAs

(2017) Yifei Shen et al.   PLANT JOURNAL

Suppressive effect of microRNA319 expression on rice plant height

(2017) Wei-Ting Liu et al.   THEORETICAL AND APPLIED GENETICS

A-ZIP53, a dominant negative reveals the molecular mechanism of heterodimerization between bZIP53, bZIP10 and bZIP25 involved in Arabidopsis seed maturation

(2017) Prateek Jain et al.   Scientific Reports

Small RNA Sequencing Reveals Differential miRNA Expression in the Early Development of Broccoli (Brassica oleracea var. italica) Pollen

(2017) Hui Li et al.   Frontiers in Plant Science

Optimization of Nitrogen Rate and Planting Density for Improving Yield, Nitrogen Use Efficiency, and Lodging Resistance in Oilseed Rape

(2017) Shahbaz Khan et al.   Frontiers in Plant Science

Influence of nitrogen and phosphorous on the growth and root morphology of Acer mono

(2017) Muhammad Razaq et al.   PLoS One

Comparative analysis of miRNAs of two rapeseed genotypes in response to acetohydroxyacid synthase-inhibiting herbicides by high-throughput sequencing

(2017) Maolong Hu et al.   PLoS One

Over-expression of miR158 causes pollen abortion in Brassica campestris ssp. chinensis

(2016) Zhiming Ma et al.   PLANT MOLECULAR BIOLOGY

Genetic dissection of plant architecture and yield-related traits in Brassica napus

(2016) Guangqin Cai et al.   Scientific Reports

Identification of microRNAs Actively Involved in Fatty Acid Biosynthesis in Developing Brassica napus Seeds Using High-Throughput Sequencing

(2016) Jia Wang et al.   Frontiers in Plant Science

MicroRNA and mRNA expression profiling analysis revealed the regulation of plant height in Gossypium hirsutum

(2015) Wenyan An et al.   BMC GENOMICS

Genome-wide association study for flowering time, maturity dates and plant height in early maturing soybean (Glycine max) germplasm

(2015) Jiaoping Zhang et al.   BMC GENOMICS

Alteration of osa-miR156e expression affects rice plant architecture and strigolactones (SLs) pathway

(2015) Zhihui Chen et al.   PLANT CELL REPORTS

Coordinated regulation of vegetative and reproductive branching in rice

(2015) Lei Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Role of microRNAs involved in plant response to nitrogen and phosphorous limiting conditions

(2015) Giao N. Nguyen et al.   Frontiers in Plant Science

Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.)

(2014) Ran Han et al.   BMC GENOMICS

The Genetic Architecture Of Maize Height

(2014) Jason A. Peiffer et al.   GENETICS

Identification and Validation of miRNAs Associated with the Resistance of Maize (Zea mays L.) to Exserohilum turcicum

(2014) Fangli Wu et al.   PLoS One

Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

(2014) B. Chalhoub et al.   SCIENCE

Evolutionary conservation of microRNA regulatory programs in plant flower development

(2013) Yan Luo et al.   DEVELOPMENTAL BIOLOGY

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Biogenesis, Turnover, and Mode of Action of Plant MicroRNAs

(2013) K. Rogers et al.   PLANT CELL

Involvement of phytochrome A in suppression of photomorphogenesis in rice seedling grown in red light

(2013) ANSUMAN ROY et al.   PLANT CELL AND ENVIRONMENT

Nitrogen and phosphorus fertilization negatively affects strigolactone production and exudation in sorghum

(2013) Kaori Yoneyama et al.   PLANTA

Insight into estrogen receptor beta–beta and alpha–beta homo- and heterodimerization: A combined molecular dynamics and sequence analysis study

(2012) Sandipan Chakraborty et al.   BIOPHYSICAL CHEMISTRY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

MicroRNA159 Can Act as a Switch or Tuning MicroRNA Independently of Its Abundance in Arabidopsis

(2012) Maria M. Alonso-Peral et al.   PLoS One

Small RNA Profiling in Two Brassica napus Cultivars Identifies MicroRNAs with Oil Production- and Development-Correlated Expression and New Small RNA Classes

(2011) Y.-T. Zhao et al.   PLANT PHYSIOLOGY

The PAL2 promoter activities in relation to structural development and adaptation in Arabidopsis thaliana

(2011) Jeh Haur Wong et al.   PLANTA

On reconciling the interactions between APETALA2, miR172 and AGAMOUS with the ABC model of flower development

(2010) H. Wollmann et al.   DEVELOPMENT

Genome-wide identification and analysis of drought-responsive microRNAs in Oryza sativa

(2010) Liguo Zhou et al.   JOURNAL OF EXPERIMENTAL BOTANY

MicroRNA171c-Targeted SCL6-II, SCL6-III, and SCL6-IV Genes Regulate Shoot Branching in Arabidopsis

(2010) Long Wang et al.   Molecular Plant

Metabolic and Signaling Aspects Underpinning the Regulation of Plant Carbon Nitrogen Interactions

(2010) Adriano Nunes-Nesi et al.   Molecular Plant

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

The Sequential Action of miR156 and miR172 Regulates Developmental Timing in Arabidopsis

(2009) Gang Wu et al.   CELL

Genes for control of plant stature and form

(2009) Victor B. Busov et al.   NEW PHYTOLOGIST

Ectopic expression of miR396 suppressesGRFtarget gene expression and alters leaf growth inArabidopsis

(2009) Dongmei Liu et al.   PHYSIOLOGIA PLANTARUM

d14, a Strigolactone-Insensitive Mutant of Rice, Shows an Accelerated Outgrowth of Tillers

(2009) Tomotsugu Arite et al.   PLANT AND CELL PHYSIOLOGY

DWARF27, an Iron-Containing Protein Required for the Biosynthesis of Strigolactones, Regulates Rice Tiller Bud Outgrowth

(2009) H. Lin et al.   PLANT CELL

Quantitative trait loci controlling plant architectural traits in cotton

(2009) Xianliang Song et al.   PLANT SCIENCE

Molecular Basis of Plant Architecture

(2008) Yonghong Wang et al.   Annual Review of Plant Biology

EXPORTIN1 Genes Are Essential for Development and Function of the Gametophytes in Arabidopsis thaliana

(2008) Robert Blanvillain et al.   GENETICS

Mitochondrial respiratory pathways modulate nitrate sensing and nitrogen-dependent regulation of plant architecture in Nicotiana sylvestris

(2008) Till K. Pellny et al.   PLANT JOURNAL

The OSU1/QUA2/TSD2-Encoded Putative Methyltransferase Is a Critical Modulator of Carbon and Nitrogen Nutrient Balance Response in Arabidopsis

(2008) Peng Gao et al.   PLoS One