Viral Metagenomics in the Clinical Realm: Lessons Learned from a Swiss-Wide Ring Trial

High-throughput sequencing for the aetiologic identification of viral encephalitis, meningoencephalitis and meningitis. A narrative review and clinical appraisal

(2019) Marie-Céline Zanella et al.   CLINICAL MICROBIOLOGY AND INFECTION

Contaminating viral sequences in high-throughput sequencing viromics: a linkage study of 700 sequencing libraries

(2019) Maria Asplund et al.   CLINICAL MICROBIOLOGY AND INFECTION

Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid

(2019) Steve Miller et al.   GENOME RESEARCH

Proficiency Testing of Virus Diagnostics Based on Bioinformatics Analysis of Simulated In Silico High-Throughput Sequencing Data Sets

(2019) Annika Brinkmann et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Clinical Metagenomic Sequencing for Diagnosis of Meningitis and Encephalitis

(2019) Michael R. Wilson et al.   NEW ENGLAND JOURNAL OF MEDICINE

The challenge of diagnostic metagenomics

(2018) Alexander L. Greninger   EXPERT REVIEW OF MOLECULAR DIAGNOSTICS

Encephalitis diagnosis using metagenomics: application of next generation sequencing for undiagnosed cases

(2018) Julianne R. Brown et al.   JOURNAL OF INFECTION

A Reference Viral Database (RVDB) To Enhance Bioinformatics Analysis of High-Throughput Sequencing for Novel Virus Detection

(2018) Norman Goodacre et al.   mSphere

Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens

(2018) Natacha Couto et al.   Scientific Reports

Clinical Metagenomic Next-Generation Sequencing for Pathogen Detection

(2018) Wei Gu et al.   Annual Review of Pathology-Mechanisms of Disease

Application of next generation sequencing in clinical microbiology and infection prevention

(2017) Ruud H. Deurenberg et al.   JOURNAL OF BIOTECHNOLOGY

Unbiased metagenomic sequencing complements specific routine diagnostic methods and increases chances to detect rare viral strains

(2015) Dagmara W. Lewandowska et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

Comprehensive Human Virus Screening Using High-Throughput Sequencing with a User-Friendly Representation of Bioinformatics Analysis: a Pilot Study

(2014) Tom J. Petty et al.   JOURNAL OF CLINICAL MICROBIOLOGY

ART: a next-generation sequencing read simulator

(2011) Weichun Huang et al.   BIOINFORMATICS