Rapid and Cost-Efficient Enterovirus Genotyping from Clinical Samples Using Flongle Flow Cells

MinION sequencing to genotype US strains of infectious laryngotracheitis virus

(2019) Stephen J. Spatz et al.   AVIAN PATHOLOGY

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

OUP accepted manuscript

(2018)   BIOINFORMATICS

Next-generation sequencing technologies and their application to the study and control of bacterial infections

(2018) J. Besser et al.   CLINICAL MICROBIOLOGY AND INFECTION

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Highly parallel direct RNA sequencing on an array of nanopores

(2018) Daniel R Garalde et al.   NATURE METHODS

Rapid Multiplex Small DNA Sequencing on the MinION Nanopore Sequencing Platform

(2018) Shan Wei et al.   G3-Genes Genomes Genetics

Detection of Viral Pathogens With Multiplex Nanopore MinION Sequencing: Be Careful With Cross-Talk

(2018) Yifei Xu et al.   Frontiers in Microbiology

Rapid virulence prediction and identification of Newcastle disease virus genotypes using third-generation sequencing

(2018) Salman L. Butt et al.   Virology Journal

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

(2017) Joshua Quick et al.   Nature Protocols

Rhinoviruses and Respiratory Enteroviruses: Not as Simple as ABC

(2016) Léna Royston et al.   Viruses-Basel

Realtime analysis and visualization of MinION sequencing data with npReader

(2015) Minh Duc Cao et al.   BIOINFORMATICS

A generic assay for whole-genome amplification and deep sequencing of enterovirus A71

(2015) Le Van Tan et al.   JOURNAL OF VIROLOGICAL METHODS

A complete bacterial genome assembled de novo using only nanopore sequencing data

(2015) Nicholas J Loman et al.   NATURE METHODS

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Detection of 3′-End RNA Uridylation with a Protein Nanopore

(2013) Massimiliano Clamer et al.   ACS Nano

An automated genotyping tool for enteroviruses and noroviruses

(2011) A. Kroneman et al.   JOURNAL OF CLINICAL VIROLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Rapid routine detection of enterovirus RNA in cerebrospinal fluid by a one-step real-time RT-PCR assay

(2008) Uta Dierssen et al.   JOURNAL OF CLINICAL VIROLOGY