Flavonoid Biosynthesis Is Likely More Susceptible to Elevation and Tree Age Than Other Branch Pathways Involved in Phenylpropanoid Biosynthesis in Ginkgo Leaves

Modulation of Phytohormone Signaling: A Primary Function of Flavonoids in Plant–Environment Interactions

(2018) Cecilia Brunetti et al.   Frontiers in Plant Science

XCMS-MRM and METLIN-MRM: a cloud library and public resource for targeted analysis of small molecules

(2018) Xavier Domingo-Almenara et al.   NATURE METHODS

Flavonoid biosynthetic pathways in plants: Versatile targets for metabolic engineering

(2018) Seyed Mohammad Nabavi et al.   BIOTECHNOLOGY ADVANCES

PubChem 2019 update: improved access to chemical data

(2018) Sunghwan Kim et al.   NUCLEIC ACIDS RESEARCH

Spatial and Temporal Localization of Flavonoid Metabolites in Strawberry Fruit (Fragaria × ananassa)

(2017) Anna C. Crecelius et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Variation in Flavonoid Composition and Radical-Scavenging Activity in Ginkgo biloba L. due to the Growth Location and Time of Harvest

(2017) Laura Rimkiene et al.   JOURNAL OF FOOD QUALITY

Dose-response characteristics of Clematis triterpenoid saponins and clematichinenoside AR in rheumatoid arthritis rats by liquid chromatography/mass spectrometry-based serum and urine metabolomics

(2017) Rui Li et al.   JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS

HMDB 4.0: the human metabolome database for 2018

(2017) David S Wishart et al.   NUCLEIC ACIDS RESEARCH

Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato

(2017) Feng Wang et al.   PLANT PHYSIOLOGY

Changes in root hydraulic conductivity facilitate the overall hydraulic response of rice ( Oryza sativa L.) cultivars to salt and osmotic stress

(2017) Delong Meng et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Rapid changes in root hydraulic conductivity and aquaporin expression in rice (Oryza sativaL.) in response to shoot removal – xylem tension as a possible signal

(2016) Delong Meng et al.   ANNALS OF BOTANY

Impact of Altitudes and Habitats on Valerenic Acid, Total Phenolics, Flavonoids, Tannins, and Antioxidant Activity of Valeriana jatamansi

(2016) Arun K. Jugran et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

iTAK: A Program for Genome-wide Prediction and Classification of Plant Transcription Factors, Transcriptional Regulators, and Protein Kinases

(2016) Yi Zheng et al.   Molecular Plant

Isoprenoids and phenylpropanoids are key components of the antioxidant defense system of plants facing severe excess light stress

(2015) Cecilia Brunetti et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Phenolic profile of Dunaliella tertiolecta growing under high levels of copper and iron

(2015) Aroa López et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Accumulation of Phenylpropanoids by White, Blue, and Red Light Irradiation and Their Organ-Specific Distribution in Chinese Cabbage (Brassica rapa ssp. pekinensis)

(2015) Yeon Jeong Kim et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Molecular Progress in Research on Fruit Astringency

(2015) Min He et al.   MOLECULES

An optimized ultrasound-assisted extraction and simultaneous quantification of 26 characteristic components with four structure types in functional foods from ginkgo seeds

(2014) Guisheng Zhou et al.   FOOD CHEMISTRY

Effects of Light-Emitting Diodes on Expression of Phenylpropanoid Biosynthetic Genes and Accumulation of Phenylpropanoids in Fagopyrum tataricum Sprouts

(2014) Aye Aye Thwe et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Blue light induced anthocyanin accumulation and expression of associated genes in Chinese bayberry fruit

(2014) Liyu Shi et al.   SCIENTIA HORTICULTURAE

Light-controlled flavonoid biosynthesis in fruits

(2014) Laura Zoratti et al.   Frontiers in Plant Science

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors

(2013) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

Differences in plant growth and leaf sesamin content of the lignan-rich sesame variety ^|^#8216;Gomazou^|^#8217; under continuous light of different wavelengths

(2013) Naoki Hata et al.   Plant Biotechnology

Functional roles of flavonoids in photoprotection: New evidence, lessons from the past

(2013) Giovanni Agati et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Molecular Cloning and Characterization of Three Genes Encoding Dihydroflavonol-4-Reductase from Ginkgo biloba in Anthocyanin Biosynthetic Pathway

(2013) Cheng Hua et al.   PLoS One

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

(2012) M.-A. Dillies et al.   BRIEFINGS IN BIOINFORMATICS

Influences of Four Different Light-Emitting Diode Lights on Flowering and Polyphenol Variations in the Leaves of Chrysanthemum (Chrysanthemum morifolium)

(2012) Sung Woo Jeong et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Flavonoid biosynthesis-related genes in grape skin are differentially regulated by temperature and light conditions

(2012) Akifumi Azuma et al.   PLANTA

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Solar UV-B and ABA Are Involved in Phenol Metabolism of Vitis vinifera L. Increasing Biosynthesis of Berry Skin Polyphenols

(2011) Federico J. Berli et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Effects of light on production of endogenous and exogenous lignans by Forsythia koreana wildtype and transgenic cells

(2011) Kinuyo Morimoto et al.   Plant Biotechnology

Transcriptional networks for lignin biosynthesis: more complex than we thought?

(2011) Qiao Zhao et al.   TRENDS IN PLANT SCIENCE

MassBank: a public repository for sharing mass spectral data for life sciences

(2010) Hisayuki Horai et al.   JOURNAL OF MASS SPECTROMETRY

Plant aging and excess light enhance flavan-3-ol content in Cistus clusii

(2010) Iker Hernández et al.   JOURNAL OF PLANT PHYSIOLOGY

The biosynthesis of flavonoids is enhanced similarly by UV radiation and root zone salinity in L. vulgare leaves

(2010) Giovanni Agati et al.   JOURNAL OF PLANT PHYSIOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Multiple functional roles of flavonoids in photoprotection

(2010) Giovanni Agati et al.   NEW PHYTOLOGIST

Effect of latitude on flavonoid biosynthesis in plants

(2010) LAURA JAAKOLA et al.   PLANT CELL AND ENVIRONMENT

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Phenylpropanoid Biosynthesis

(2009) Thomas Vogt   Molecular Plant

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

(2009) Peter J. A. Cock et al.   NUCLEIC ACIDS RESEARCH

PlnTFDB: updated content and new features of the plant transcription factor database

(2009) Paulino Pérez-Rodríguez et al.   NUCLEIC ACIDS RESEARCH

Abscisic acid is involved in the response of grape (Vitis viniferaL.) cv. Malbec leaf tissues to ultraviolet-B radiation by enhancing ultraviolet-absorbing compounds, antioxidant enzymes and membrane sterols

(2009) FEDERICO J. BERLI et al.   PLANT CELL AND ENVIRONMENT

An Abundance of Ubiquitously Expressed Genes Revealed by Tissue Transcriptome Sequence Data

(2009) Daniel Ramsköld et al.   PLoS Computational Biology

Impact of chloroplastic- and extracellular-sourced ROS on high light-responsive gene expression in Arabidopsis

(2008) Ulrike Bechtold et al.   JOURNAL OF EXPERIMENTAL BOTANY

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH

Concentration of elements in silver fir (Abies alba Mill.) needles as a function of needles’ age

(2008) Tomasz H. Szymura   TREES-STRUCTURE AND FUNCTION