Fishing in the Soup – Pathogen Detection in Food Safety Using Metabarcoding and Metagenomic Sequencing
Published 2019 View Full Article
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Title
Fishing in the Soup – Pathogen Detection in Food Safety Using Metabarcoding and Metagenomic Sequencing
Authors
Keywords
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Journal
Frontiers in Microbiology
Volume 10, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2019-08-06
DOI
10.3389/fmicb.2019.01805
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- (2018) BIOINFORMATICS
- Revisiting Francisella tularensis subsp. holarctica, Causative Agent of Tularemia in Germany With Bioinformatics: New Insights in Genome Structure, DNA Methylation and Comparative Phylogenetic Analysis
- (2018) Anne Busch et al. Frontiers in Microbiology
- Correcting for 16S rRNA gene copy numbers in microbiome surveys remains an unsolved problem
- (2018) Stilianos Louca et al. Microbiome
- A Versatile Sample Processing Workflow for Metagenomic Pathogen Detection
- (2018) Claudia Wylezich et al. Scientific Reports
- Denoising the Denoisers: an independent evaluation of microbiome sequence error-correction approaches
- (2018) Jacob T. Nearing et al. PeerJ
- Development of an Analysis Pipeline Characterizing Multiple Hypervariable Regions of 16S rRNA Using Mock Samples
- (2016) Jennifer J. Barb et al. PLoS One
- Molecular characterisation of Brucella species
- (2016) H.C. SCHOLZ et al. REVUE SCIENTIFIQUE ET TECHNIQUE-OFFICE INTERNATIONAL DES EPIZOOTIES
- An Improved Method for High Quality Metagenomics DNA Extraction from Human and Environmental Samples
- (2016) Satyabrata Bag et al. Scientific Reports
- MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
- (2015) Dinghua Li et al. BIOINFORMATICS
- Impact of three Illumina library construction methods on GC bias and HLA genotype calling
- (2015) James H. Lan et al. HUMAN IMMUNOLOGY
- Tracing Origins of theSalmonellaBareilly Strain Causing a Food-borne Outbreak in the United States
- (2015) Maria Hoffmann et al. JOURNAL OF INFECTIOUS DISEASES
- MetaPhlAn2 for enhanced metagenomic taxonomic profiling
- (2015) Duy Tin Truong et al. NATURE METHODS
- Library preparation methodology can influence genomic and functional predictions in human microbiome research
- (2015) Marcus B. Jones et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development
- (2014) Steven F. Stoddard et al. NUCLEIC ACIDS RESEARCH
- Kraken: ultrafast metagenomic sequence classification using exact alignments
- (2014) Derrick E Wood et al. GENOME BIOLOGY
- Intragenomic Heterogeneity of 16S rRNA Genes Causes Overestimation of Prokaryotic Diversity
- (2013) Dong-Lei Sun et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- QUAST: quality assessment tool for genome assemblies
- (2013) Alexey Gurevich et al. BIOINFORMATICS
- Public Health Value of Next-Generation DNA Sequencing of Enterohemorrhagic Escherichia coli Isolates from an Outbreak
- (2012) Anthony P. Underwood et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
- (2012) Anna Klindworth et al. NUCLEIC ACIDS RESEARCH
- Removing Noise From Pyrosequenced Amplicons
- (2011) Christopher Quince et al. BMC BIOINFORMATICS
- Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea
- (2011) Daniel PR Herlemann et al. ISME Journal
- German Outbreak ofEscherichia coliO104:H4 Associated with Sprouts
- (2011) Udo Buchholz et al. NEW ENGLAND JOURNAL OF MEDICINE
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions
- (2010) Marcus J. Claesson et al. NUCLEIC ACIDS RESEARCH
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Complete Genome Sequence of Francisella tularensis Subspecies holarctica FTNF002-00
- (2009) Ravi D. Barabote et al. PLoS One
- The influence of sex, handedness, and washing on the diversity of hand surface bacteria
- (2008) N. Fierer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing
- (2008) Susan M. Huse et al. PLoS Genetics
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