Microbial Communities Associated With Passive Acidic Abandoned Coal Mine Remediation

Taxonomic and Functional Differences between Microbial Communities in Qinghai Lake and Its Input Streams

(2017) Ze Ren et al.   Frontiers in Microbiology

Isolation and characterisation of mineral-oxidising “Acidibacillus” spp. from mine sites and geothermal environments in different global locations

(2016) Roseanne Holanda et al.   RESEARCH IN MICROBIOLOGY

Genome reduction in an abundant and ubiquitous soil bacterium ‘Candidatus Udaeobacter copiosus’

(2016) Tess E. Brewer et al.   Nature Microbiology

Microbial stoichiometry overrides biomass as a regulator of soil carbon and nitrogen cycling

(2015) Robert W. Buchkowski et al.   ECOLOGY

Acid mine drainage and stream recovery: Effects of restoration on water quality, macroinvertebrates, and fish

(2015) K.M. Williams et al.   Knowledge and Management of Aquatic Ecosystems

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Microbial diversity and metabolic networks in acid mine drainage habitats

(2015) Celia Méndez-García et al.   Frontiers in Microbiology

Revisiting the dissimilatory sulfate reduction pathway

(2015) A. S. BRADLEY et al.   Geobiology

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Bacterial community responses to a gradient of alkaline mountaintop mine drainage in Central Appalachian streams

(2014) Raven L Bier et al.   ISME Journal

Pathview: an R/Bioconductor package for pathway-based data integration and visualization

(2013) Weijun Luo et al.   BIOINFORMATICS

Long-lasting neurotoxic effects of exposure to methylmercury during development

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Stream microbial ecology

(2013) Stuart Findlay   JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Diversity of microorganisms from forest soils differently polluted with heavy metals

(2012) Marcin Chodak et al.   APPLIED SOIL ECOLOGY

Metagenomic microbial community profiling using unique clade-specific marker genes

(2012) Nicola Segata et al.   NATURE METHODS

Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome

(2012) Sahar Abubucker et al.   PLoS Computational Biology

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Microbial and Mineralogical Characterizations of Soils Collected from the Deep Biosphere of the Former Homestake Gold Mine, South Dakota

(2010) Gurdeep Rastogi et al.   MICROBIAL ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

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The ecology and biotechnology of sulphate-reducing bacteria

(2008) Gerard Muyzer et al.   NATURE REVIEWS MICROBIOLOGY

Impact of Acid Mine Drainage (AMD) on Water Quality, Stream Sediments and Periphytic Diatom Communities in the Surrounding Streams of Aljustrel Mining Area (Portugal)

(2008) A. T. Luís et al.   WATER AIR AND SOIL POLLUTION