Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data

Elevated polygenic burden for autism is associated with differential DNA methylation at birth

(2018) Eilis Hannon et al.   Genome Medicine

Cell type-specific DNA methylation in neonatal cord tissue and cord blood: A 850K-reference panel and comparison of cell-types

(2018) Xinyi Lin et al.   Epigenetics

Epigenetic control of innate and adaptive immune memory

(2018) Colleen M. Lau et al.   NATURE IMMUNOLOGY

Prenatal phthalate exposure and altered patterns of DNA methylation in cord blood

(2017) Olivia Solomon et al.   ENVIRONMENTAL AND MOLECULAR MUTAGENESIS

Cell-type deconvolution from DNA methylation: a review of recent applications

(2017) Alexander J. Titus et al.   HUMAN MOLECULAR GENETICS

Metabolic and Epigenetic Coordination of T Cell and Macrophage Immunity

(2017) Anthony T. Phan et al.   IMMUNITY

Effects of nongenetic factors on immune cell dynamics in early childhood: The Generation R Study

(2017) Diana van den Heuvel et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Long-term prenatal exposure to paracetamol is associated with DNA methylation differences in children diagnosed with ADHD

(2017) Kristina Gervin et al.   Clinical Epigenetics

Cord blood hematopoietic cells from preterm infants display altered DNA methylation patterns

(2017) Olivia M. de Goede et al.   Clinical Epigenetics

Improving cell mixture deconvolution by identifying optimal DNA methylation libraries (IDOL)

(2016) Devin C. Koestler et al.   BMC BIOINFORMATICS

Validation of a DNA methylation reference panel for the estimation of nucleated cells types in cord blood

(2016) Andres Cardenas et al.   Epigenetics

Cell type specific DNA methylation in cord blood: A 450K-reference data set and cell count-based validation of estimated cell type composition

(2016) Kristina Gervin et al.   Epigenetics

DNA methylation of cord blood cell types: Applications for mixed cell birth studies

(2016) Kelly M. Bakulski et al.   Epigenetics

The Generation R Study: design and cohort update 2017

(2016) Marjolein N. Kooijman et al.   EUROPEAN JOURNAL OF EPIDEMIOLOGY

Distinct Trends of DNA Methylation Patterning in the Innate and Adaptive Immune Systems

(2016) Ronald P. Schuyler et al.   Cell Reports

Cytomegalovirus- and Epstein-Barr Virus–Induced T-Cell Expansions in Young Children Do Not Impair Naive T-cell Populations or Vaccination Responses: The Generation R Study

(2015) Diana van den Heuvel et al.   JOURNAL OF INFECTIOUS DISEASES

Nucleated red blood cells impact DNA methylation and expression analyses of cord blood hematopoietic cells

(2015) Olivia M. de Goede et al.   Clinical Epigenetics

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays

(2014) Martin J. Aryee et al.   BIOINFORMATICS

The Generation R Study: Biobank update 2015

(2014) Claudia J. Kruithof et al.   EUROPEAN JOURNAL OF EPIDEMIOLOGY

Accounting for cellular heterogeneity is critical in epigenome-wide association studies

(2014) Andrew E Jaffe et al.   GENOME BIOLOGY

DNA methylation arrays as surrogate measures of cell mixture distribution

(2012) Eugene Houseman et al.   BMC BIOINFORMATICS

The Generation R Study: design and cohort update 2012

(2012) Vincent W. V. Jaddoe et al.   EUROPEAN JOURNAL OF EPIDEMIOLOGY

Differential DNA Methylation in Purified Human Blood Cells: Implications for Cell Lineage and Studies on Disease Susceptibility

(2012) Lovisa E. Reinius et al.   PLoS One

COMPARISON OF THE SORTING EFFICIENCY AND INFLUENCE ON CELL FUNCTION BETWEEN THE STERILE FLOW CYTOMETRY AND IMMUNOMAGNETIC BEAD PURIFICATION METHODS

(2012) Qiao Li et al.   PREPARATIVE BIOCHEMISTRY & BIOTECHNOLOGY