An approximate full-likelihood method for inferring selection and allele frequency trajectories from DNA sequence data

Physiological and Genetic Adaptations to Diving in Sea Nomads

(2018) Melissa A. Ilardo et al.   CELL

Localization of adaptive variants in human genomes using averaged one-dependence estimation

(2018) Lauren Alpert Sugden et al.   Nature Communications

Human demographic history has amplified the effects of background selection across the genome

(2018) Raul Torres et al.   PLoS Genetics

The Genetic Basis of Adaptation following Plastic Changes in Coloration in a Novel Environment

(2018) Ammon Corl et al.   CURRENT BIOLOGY

OUP accepted manuscript

(2018)   MOLECULAR BIOLOGY AND EVOLUTION

Reconstructing the History of Polygenic Scores Using Coalescent Trees

(2018) Michael D. Edge et al.   GENETICS

SLiM 3: Forward Genetic Simulations Beyond the Wright–Fisher Model

(2018) Benjamin C Haller et al.   MOLECULAR BIOLOGY AND EVOLUTION

The dynamics of molecular evolution over 60,000 generations

(2017) Benjamin H. Good et al.   NATURE

A high-coverage Neandertal genome from Vindija Cave in Croatia

(2017) Kay Prüfer et al.   SCIENCE

Discoal: flexible coalescent simulations with selection

(2016) Andrew D. Kern et al.   BIOINFORMATICS

Archaic Hominin Admixture Facilitated Adaptation to Out-of-Africa Environments

(2016) Rachel M. Gittelman et al.   CURRENT BIOLOGY

Genome-wide scans reveal variants at EDAR predominantly affecting hair straightness in Han Chinese and Uyghur populations

(2016) Sijie Wu et al.   HUMAN GENETICS

Deep Learning for Population Genetic Inference

(2016) Sara Sheehan et al.   PLoS Computational Biology

S/HIC: Robust Identification of Soft and Hard Sweeps Using Machine Learning

(2016) Daniel R. Schrider et al.   PLoS Genetics

A Composite-Likelihood Method for Detecting Incomplete Selective Sweep from Population Genomic Data

(2015) Ha My T. Vy et al.   GENETICS

Inferring the age of a fixed beneficial allele

(2015) Louise Ormond et al.   MOLECULAR ECOLOGY

Genome-wide patterns of selection in 230 ancient Eurasians

(2015) Iain Mathieson et al.   NATURE

Recent Selective Sweeps in North American Drosophila melanogaster Show Signatures of Soft Sweeps

(2015) Nandita R. Garud et al.   PLoS Genetics

A Composite-Likelihood Method for Detecting Incomplete Selective Sweep from Population Genomic Data

(2015) Ha My T. Vy et al.   GENETICS

On Detecting Incomplete Soft or Hard Selective Sweeps Using Haplotype Structure

(2014) Anna Ferrer-Admetlla et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ancient human genomes suggest three ancestral populations for present-day Europeans

(2014) Iosif Lazaridis et al.   NATURE

Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA

(2014) Emilia Huerta-Sánchez et al.   NATURE

Direct evidence for positive selection of skin, hair, and eye pigmentation in Europeans during the last 5,000 y

(2014) Sandra Wilde et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Theory and applications of a deterministic approximation to the coalescent model

(2014) Ethan M. Jewett et al.   THEORETICAL POPULATION BIOLOGY

Genome-Wide Inference of Ancestral Recombination Graphs

(2014) Matthew D. Rasmussen et al.   PLoS Genetics

Learning Natural Selection from the Site Frequency Spectrum

(2013) R. Ronen et al.   GENETICS

Estimating Selection Coefficients in Spatially Structured Populations from Time Series Data of Allele Frequencies

(2013) I. Mathieson et al.   GENETICS

Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations

(2013) Gregory I. Lang et al.   NATURE

The complete genome sequence of a Neanderthal from the Altai Mountains

(2013) Kay Prüfer et al.   NATURE

Evolution and Functional Impact of Rare Coding Variation from Deep Sequencing of Human Exomes

(2012) J. A. Tennessen et al.   SCIENCE

Melanesian Blond Hair Is Caused by an Amino Acid Change in TYRP1

(2012) E. E. Kenny et al.   SCIENCE

A High-Coverage Genome Sequence from an Archaic Denisovan Individual

(2012) M. Meyer et al.   SCIENCE

Distinguishing between Selective Sweeps from Standing Variation and from a De Novo Mutation

(2012) Benjamin M. Peter et al.   PLoS Genetics

Demographic history and rare allele sharing among human populations

(2011) S. Gravel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distinguishing Positive Selection From Neutral Evolution: Boosting the Performance of Summary Statistics

(2010) K. Lin et al.   GENETICS

A Composite of Multiple Signals Distinguishes Causal Variants in Regions of Positive Selection

(2010) S. R. Grossman et al.   SCIENCE

Digital Quantification of Human Eye Color Highlights Genetic Association of Three New Loci

(2010) Fan Liu et al.   PLoS Genetics

Web-Based, Participant-Driven Studies Yield Novel Genetic Associations for Common Traits

(2010) Nicholas Eriksson et al.   PLoS Genetics

A Common Variation in EDAR Is a Genetic Determinant of Shovel-Shaped Incisors

(2009) Ryosuke Kimura et al.   AMERICAN JOURNAL OF HUMAN GENETICS

A Single SNP in an Evolutionary Conserved Region within Intron 86 of the HERC2 Gene Determines Human Blue-Brown Eye Color

(2008) Richard A. Sturm et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Estimation of 2Nes From Temporal Allele Frequency Data

(2008) J. P. Bollback et al.   GENETICS

Two newly identified genetic determinants of pigmentation in Europeans

(2008) Patrick Sulem et al.   NATURE GENETICS

A Genome-Wide Association Study Identifies Novel Alleles Associated with Hair Color and Skin Pigmentation

(2008) Jiali Han et al.   PLoS Genetics