Estimating information in time-varying signals

Optimal Decoding of Cellular Identities in a Genetic Network

(2019) Mariela D. Petkova et al.   CELL

Distributed and dynamic intracellular organization of extracellular information

(2018) Alejandro A. Granados et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

p53 pulses lead to distinct patterns of gene expression albeit similar DNA-binding dynamics

(2017) Antonina Hafner et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

p53 pulses lead to distinct patterns of gene expression albeit similar DNA-binding dynamics

(2017) Antonina Hafner et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Capacity of a Simple Intercellular Signal Transduction Channel

(2016) Peter J. Thomas et al.   IEEE TRANSACTIONS ON INFORMATION THEORY

Information Processing in Living Systems

(2016) Gašper Tkačik et al.   Annual Review of Condensed Matter Physics

Learning machines and sleeping brains: Automatic sleep stage classification using decision-tree multi-class support vector machines

(2015) Tarek Lajnef et al.   JOURNAL OF NEUROSCIENCE METHODS

Optimizing information flow in small genetic networks. IV. Spatial coupling

(2015) Thomas R. Sokolowski et al.   PHYSICAL REVIEW E

High Accuracy Decoding of Dynamical Motion from a Large Retinal Population

(2015) Olivier Marre et al.   PLoS Computational Biology

Improved Estimation and Interpretation of Correlations in Neural Circuits

(2015) Dimitri Yatsenko et al.   PLoS Computational Biology

Noise and Information Transmission in Promoters with Multiple Internal States

(2014) Georg Rieckh et al.   BIOPHYSICAL JOURNAL

Pulsatile Dynamics in the Yeast Proteome

(2014) Chiraj K. Dalal et al.   CURRENT BIOLOGY

Environmental sensing, information transfer, and cellular decision-making

(2014) Clive G Bowsher et al.   CURRENT OPINION IN BIOTECHNOLOGY

Positional Information, Positional Error, and Readout Precision in Morphogenesis: A Mathematical Framework

(2014) G. Tka ik et al.   GENETICS

Information transfer by leaky, heterogeneous, protein kinase signaling systems

(2014) M. Voliotis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Accurate information transmission through dynamic biochemical signaling networks

(2014) J. Selimkhanov et al.   SCIENCE

The speed-accuracy tradeoff: history, physiology, methodology, and behavior

(2014) Richard P. Heitz   Frontiers in Neuroscience

Encoding and Decoding Cellular Information through Signaling Dynamics

(2013) Jeremy E. Purvis et al.   CELL

Positional information, in bits

(2013) J. O. Dubuis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional Roles of Pulsing in Genetic Circuits

(2013) J. H. Levine et al.   SCIENCE

TRENTOOL: A Matlab open source toolbox to analyse information flow in time series data with transfer entropy

(2012) Michael Lindner et al.   BMC NEUROSCIENCE

Frequency-Modulated Pulses of ERK Activity Transmit Quantitative Proliferation Signals

(2012) John G. Albeck et al.   MOLECULAR CELL

Optimizing information flow in small genetic networks. III. A self-interacting gene

(2012) Gašper Tkačik et al.   PHYSICAL REVIEW E

Multiplexing Biochemical Signals

(2011) Wiet de Ronde et al.   PHYSICAL REVIEW LETTERS

Information Transduction Capacity of Noisy Biochemical Signaling Networks

(2011) R. Cheong et al.   SCIENCE

Functional roles for noise in genetic circuits

(2010) Avigdor Eldar et al.   NATURE

Mutual information in time-varying biochemical systems

(2010) Filipe Tostevin et al.   PHYSICAL REVIEW E

Optimizing information flow in small genetic networks. II. Feed-forward interactions

(2010) Aleksandra M. Walczak et al.   PHYSICAL REVIEW E

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

(2010) Y. Taniguchi et al.   SCIENCE

Extracting information from neuronal populations: information theory and decoding approaches

(2009) Rodrigo Quian Quiroga et al.   NATURE REVIEWS NEUROSCIENCE

Optimizing information flow in small genetic networks

(2009) Gašper Tkačik et al.   PHYSICAL REVIEW E

Mutual Information between Input and Output Trajectories of Biochemical Networks

(2009) Filipe Tostevin et al.   PHYSICAL REVIEW LETTERS

Information capacity of genetic regulatory elements

(2008) Gašper Tkačik et al.   PHYSICAL REVIEW E