Global invasion history of the agricultural pest butterfly Pieris rapae revealed with genomics and citizen science

Global invasion history of the agricultural pest butterfly Pieris rapae revealed with genomics and citizen science

(2019) Sean F. Ryan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rapid Divergence of Wing Volatile Profiles Between Subspecies of the Butterfly Pieris rapae (Lepidoptera: Pieridae)

(2018) Eden W McQueen et al.   JOURNAL OF INSECT SCIENCE

Climate-mediated hybrid zone movement revealed with genomics, museum collection, and simulation modeling

(2018) Sean F. Ryan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ABC random forests for Bayesian parameter inference

(2018) Louis Raynal et al.   BIOINFORMATICS

The role of citizen science in addressing grand challenges in food and agriculture research

(2018) S. F. Ryan et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Domestication, diversity and use of Brassica oleracea L., based on ancient Greek and Latin texts

(2017) Lorenzo Maggioni et al.   GENETIC RESOURCES AND CROP EVOLUTION

Patterns of divergence across the geographic and genomic landscape of a butterfly hybrid zone associated with a climatic gradient

(2017) Sean F. Ryan et al.   MOLECULAR ECOLOGY

Genomic inferences of domestication events are corroborated by written records in Brassica rapa

(2017) Xinshuai Qi et al.   MOLECULAR ECOLOGY

No saturation in the accumulation of alien species worldwide

(2017) Hanno Seebens et al.   Nature Communications

vcfr: a package to manipulate and visualize variant call format data in R

(2016) Brian J. Knaus et al.   Molecular Ecology Resources

pophelper: an R package and web app to analyse and visualize population structure

(2016) R. M. Francis   Molecular Ecology Resources

iNEXT: an R package for rarefaction and extrapolation of species diversity (Hill numbers)

(2016) T. C. Hsieh et al.   Methods in Ecology and Evolution

Historical and contemporary factors generate unique butterfly communities on islands

(2016) Raluca Vodă et al.   Scientific Reports

Crop domestication, global human-mediated migration, and the unresolved role of geography in pest control

(2016) Yolanda H. Chen   Elementa-Science of the Anthropocene

Reliable ABC model choice via random forests

(2015) Pierre Pudlo et al.   BIOINFORMATICS

popart: full-feature software for haplotype network construction

(2015) Jessica W. Leigh et al.   Methods in Ecology and Evolution

Historical Invasion Records Can Be Misleading: Genetic Evidence for Multiple Introductions of Invasive Raccoons (Procyon lotor) in Germany

(2015) Mari L. Fischer et al.   PLoS One

DIYABC v2.0: a software to make approximate Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and microsatellite data

(2014) Jean-Marie Cornuet et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Genetic landscape of populations along the Silk Road: admixture and migration patterns

(2014) Massimo Mezzavilla et al.   BMC GENETICS

fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets

(2014) Anil Raj et al.   GENETICS

Complementarity of statistical treatments to reconstruct worldwide routes of invasion: the case of the Asian ladybirdHarmonia axyridis

(2014) Eric Lombaert et al.   MOLECULAR ECOLOGY

The Invisible Prevalence of Citizen Science in Global Research: Migratory Birds and Climate Change

(2014) Caren B. Cooper et al.   PLoS One

Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction

(2014) Zhian N. Kamvar et al.   PeerJ

Environmental determinants of population divergence in life-history traits for an invasive species: climate, seasonality and natural enemies

(2013) S. Seiter et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Estimation of demo-genetic model probabilities with Approximate Bayesian Computation using linear discriminant analysis on summary statistics

(2012) ARNAUD ESTOUP et al.   Molecular Ecology Resources

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Geographic expansion of the cabbage butterfly (Pieris rapae) and the evolution of highly UV-reflecting females

(2011) Yuya Fukano et al.   Insect Science

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Inference on population history and model checking using DNA sequence and microsatellite data with the software DIYABC (v1.0)

(2010) Jean-Marie Cornuet et al.   BMC BIOINFORMATICS

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

(2010) Thibaut Jombart et al.   BMC GENETICS

Origin and Domestication of Cole Crops (Brassica oleracea L.): Linguistic and Literary Considerations1

(2010) Lorenzo Maggioni et al.   ECONOMIC BOTANY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Reconstructing routes of invasion using genetic data: why, how and so what?

(2010) ARNAUD ESTOUP et al.   MOLECULAR ECOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

The Last Glacial Maximum

(2009) P. U. Clark et al.   SCIENCE

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

The importance of transport hubs in stepping-stone invasions

(2008) O. Floerl et al.   JOURNAL OF APPLIED ECOLOGY