CRISPR / dC as9 platforms in plants: strategies and applications beyond genome editing

Transgene-Free Genome Editing in Tomato and Potato Plants Using Agrobacterium-Mediated Delivery of a CRISPR/Cas9 Cytidine Base Editor

(2019) Florian Veillet et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Turning up the Heat with Therapeutic Epigenome Editing

(2018) Alexandra Zezulin et al.   Cell Stem Cell

Phenotypic novelty by CRISPR in plants

(2018) Chen Liu et al.   DEVELOPMENTAL BIOLOGY

Robust Transcriptional Activation in Plants Using Multiplexed CRISPR-Act2.0 and mTALE-Act Systems

(2018) Levi G. Lowder et al.   Molecular Plant

The CRISPR tool kit for genome editing and beyond

(2018) Mazhar Adli   Nature Communications

Functional Analyses of PtROS1-RNAi in Poplars and Evaluation of Its Effect on DNA Methylation

(2018) Ali Movahedi et al.   JOURNAL OF PLANT BIOLOGY

Precise Editing of a Target Base in the Rice Genome Using a Modified CRISPR/Cas9 System

(2017) Yuming Lu et al.   Molecular Plant

Precise base editing in rice, wheat and maize with a Cas9-cytidine deaminase fusion

(2017) Yuan Zong et al.   NATURE BIOTECHNOLOGY

Targeted base editing in rice and tomato using a CRISPR-Cas9 cytidine deaminase fusion

(2017) Zenpei Shimatani et al.   NATURE BIOTECHNOLOGY

Live-cell CRISPR imaging in plants reveals dynamic telomere movements

(2017) Steven Dreissig et al.   PLANT JOURNAL

Oil palm drought inducible DREB1 induced expression of DRE/CRT- and non-DRE/CRT-containing genes in lowland transgenic tomato under cold and PEG treatments

(2017) Azzreena Mohamad Azzeme et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Transcriptional Regulatory Network of Plant Heat Stress Response

(2017) Naohiko Ohama et al.   TRENDS IN PLANT SCIENCE

Manipulation of nuclear architecture through CRISPR-mediated chromosomal looping

(2017) Stefanie L. Morgan et al.   Nature Communications

New Biotechnological Tools for the Genetic Improvement of Major Woody Fruit Species

(2017) Cecilia Limera et al.   Frontiers in Plant Science

Improved base excision repair inhibition and bacteriophage Mu Gam protein yields C:G-to-T:A base editors with higher efficiency and product purity

(2017) Alexis C. Komor et al.   Science Advances

Transcriptional regulation with CRISPR-Cas9: principles, advances, and applications

(2016) Andriy Didovyk et al.   CURRENT OPINION IN BIOTECHNOLOGY

Oil palm EgCBF3 conferred stress tolerance in transgenic tomato plants through modulation of the ethylene signaling pathway

(2016) Mortaza Ebrahimi et al.   JOURNAL OF PLANT PHYSIOLOGY

Genome engineering of woody plants: past, present and future

(2016) Yuriko Osakabe et al.   JOURNAL OF WOOD SCIENCE

CRISPR/Cas9 Platforms for Genome Editing in Plants: Developments and Applications

(2016) Xingliang Ma et al.   Molecular Plant

Patterns of CRISPR/Cas9 activity in plants, animals and microbes

(2016) Luisa Bortesi et al.   PLANT BIOTECHNOLOGY JOURNAL

CRISPR/Cas9 for plant genome editing: accomplishments, problems and prospects

(2016) Joseph W. Paul et al.   PLANT CELL REPORTS

A modular toolbox for gRNA–Cas9 genome engineering in plants based on the GoldenBraid standard

(2016) Marta Vazquez-Vilar et al.   Plant Methods

Efficient and transgene-free genome editing in wheat through transient expression of CRISPR/Cas9 DNA or RNA

(2016) Yi Zhang et al.   Nature Communications

The CRISPR/Cas Genome-Editing Tool: Application in Improvement of Crops

(2016) Surender Khatodia et al.   Frontiers in Plant Science

Rapid Evolution of Manifold CRISPR Systems for Plant Genome Editing

(2016) Levi Lowder et al.   Frontiers in Plant Science

The CRISPR/Cas9 system for plant genome editing and beyond

(2015) Luisa Bortesi et al.   BIOTECHNOLOGY ADVANCES

CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function

(2015) Ya Guo et al.   CELL

Abundance and distribution of RNA polymerase II in Arabidopsis interphase nuclei

(2015) Veit Schubert et al.   JOURNAL OF EXPERIMENTAL BOTANY

MicroRNA: a new target for improving plant tolerance to abiotic stress

(2015) Baohong Zhang   JOURNAL OF EXPERIMENTAL BOTANY

Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex

(2015) Silvana Konermann et al.   NATURE

DNA-free genome editing in plants with preassembled CRISPR-Cas9 ribonucleoproteins

(2015) Je Wook Woo et al.   NATURE BIOTECHNOLOGY

Epigenome editing by a CRISPR-Cas9-based acetyltransferase activates genes from promoters and enhancers

(2015) Isaac B Hilton et al.   NATURE BIOTECHNOLOGY

A light-inducible CRISPR-Cas9 system for control of endogenous gene activation

(2015) Lauren R Polstein et al.   Nature Chemical Biology

A CRISPR/Cas9 Toolbox for Multiplexed Plant Genome Editing and Transcriptional Regulation

(2015) Levi G. Lowder et al.   PLANT PHYSIOLOGY

CRISPR/Cas9-mediated genome editing and gene replacement in plants: Transitioning from lab to field

(2015) Scott M. Schaeffer et al.   PLANT SCIENCE

Function genomics of abiotic stress tolerance in plants: a CRISPR approach

(2015) Mukesh Jain   Frontiers in Plant Science

Effects of Heat Acclimation on Photosynthesis, Antioxidant Enzyme Activities, and Gene Expression in Orchardgrass under Heat Stress

(2014) Xin Zhao et al.   MOLECULES

Dimeric CRISPR RNA-guided FokI nucleases for highly specific genome editing

(2014) Shengdar Q Tsai et al.   NATURE BIOTECHNOLOGY

Fusion of catalytically inactive Cas9 to FokI nuclease improves the specificity of genome modification

(2014) John P Guilinger et al.   NATURE BIOTECHNOLOGY

Comparison of TALE designer transcription factors and the CRISPR/dCas9 in regulation of gene expression by targeting enhancers

(2014) Xuefei Gao et al.   NUCLEIC ACIDS RESEARCH

RNA-guided transcriptional regulationin plantavia synthetic dCas9-based transcription factors

(2014) Agnieszka Piatek et al.   PLANT BIOTECHNOLOGY JOURNAL

The new frontier of genome engineering with CRISPR-Cas9

(2014) J. A. Doudna et al.   SCIENCE

Light-regulated gene repositioning in Arabidopsis

(2014) Chun-Miao Feng et al.   Nature Communications

Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression

(2013) Lei S. Qi et al.   CELL

Multiplexed activation of endogenous genes by CRISPR-on, an RNA-guided transcriptional activator system

(2013) Albert W Cheng et al.   CELL RESEARCH

CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering

(2013) Prashant Mali et al.   NATURE BIOTECHNOLOGY

CRISPR interference (CRISPRi) for sequence-specific control of gene expression

(2013) Matthew H Larson et al.   Nature Protocols

Electrophoretic Deposition of Carbon Nanotubes on 3-Amino-Propyl-Triethoxysilane (APTES) Surface Functionalized Silicon Substrates

(2013) Anirban Sarkar et al.   Nanomaterials

The EDLL motif: a potent plant transcriptional activation domain from AP2/ERF transcription factors

(2012) Shiv B. Tiwari et al.   PLANT JOURNAL

A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity

(2012) M. Jinek et al.   SCIENCE

How do plants feel the heat?

(2012) Ron Mittler et al.   TRENDS IN BIOCHEMICAL SCIENCES

Targeted transcriptional repression using a chimeric TALE-SRDX repressor protein

(2011) Magdy M. Mahfouz et al.   PLANT MOLECULAR BIOLOGY

Engineering the ABA Plant Stress Pathway for Regulation of Induced Proximity

(2011) F.-S. Liang et al.   Science Signaling

Transcriptional activators and activation mechanisms

(2011) Jun Ma   Protein & Cell

The Transcriptional Repressor ARR1-SRDX Suppresses Pleiotropic Cytokinin Activities in Arabidopsis

(2008) A. Heyl et al.   PLANT PHYSIOLOGY

Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice

(2008) T. Fukao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epigenetic control of plant stress response

(2007) Alex Boyko et al.   ENVIRONMENTAL AND MOLECULAR MUTAGENESIS