Different Plant Species Have Common Sequence Features Related to mRNA Degradation Intermediates

Comprehensive analysis of mRNA internal cleavage sites in Arabidopsis thaliana

(2018) Daishin Ueno et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Comprehensive comparative analysis of 5′-end RNA-sequencing methods

(2018) Xian Adiconis et al.   NATURE METHODS

Ribothrypsis, a novel process of canonical mRNA decay, mediates ribosome-phased mRNA endonucleolysis

(2018) Fadia Ibrahim et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Ribothrypsis, a novel process of canonical mRNA decay, mediates ribosome-phased mRNA endonucleolysis

(2018) Fadia Ibrahim et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Identification of 5′-untranslated regions that function as effective translational enhancers in monocotyledonous plant cells using a novel method of genome-wide analysis

(2018) Shotaro Yamasaki et al.   Plant Biotechnology

Ribosome Collision Is Critical for Quality Control during No-Go Decay

(2017) Carrie L. Simms et al.   MOLECULAR CELL

Insights into the adaptive response of Arabidopsis thaliana to prolonged thermal stress by ribosomal profiling and RNA-Seq

(2016) Radoslaw Lukoszek et al.   BMC PLANT BIOLOGY

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV

(2016)   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

The DEAD-Box Protein Dhh1p Couples mRNA Decay and Translation by Monitoring Codon Optimality

(2016) Aditya Radhakrishnan et al.   CELL

Global Analysis of Truncated RNA Ends Reveals New Insights into Ribosome Stalling in Plants

(2016) Cheng‐Yu Hou et al.   PLANT CELL

Genome-Wide Mapping of Uncapped and Cleaved Transcripts Reveals a Role for the Nuclear mRNA Cap-Binding Complex in Cotranslational RNA Decay in Arabidopsis

(2016) Xiang Yu et al.   PLANT CELL

Super-resolution ribosome profiling reveals unannotated translation events inArabidopsis

(2016) Polly Yingshan Hsu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Improved Ribosome-Footprint and mRNA Measurements Provide Insights into Dynamics and Regulation of Yeast Translation

(2016) David E. Weinberg et al.   Cell Reports

Widespread Co-translational RNA Decay Reveals Ribosome Dynamics

(2015) Vicent Pelechano et al.   CELL

Codon Optimality Is a Major Determinant of mRNA Stability

(2015) Vladimir Presnyak et al.   CELL

Loss of Arabidopsis 5′–3′ Exoribonuclease AtXRN4 Function Enhances Heat Stress Tolerance of Plants Subjected to Severe Heat Stress

(2015) Anh Hai Nguyen et al.   PLANT AND CELL PHYSIOLOGY

Ribosome profiling reveals dynamic translational landscape in maize seedlings under drought stress

(2015) Lei Lei et al.   PLANT JOURNAL

MOIRAI: a compact workflow system for CAGE analysis

(2014) Akira Hasegawa et al.   BMC BIOINFORMATICS

Beyond cleaved small RNA targets: unraveling the complexity of plant RNA degradome data

(2014) Cheng-Yu Hou et al.   BMC GENOMICS

Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis

(2013) Rumyana Karlova et al.   JOURNAL OF EXPERIMENTAL BOTANY

Identification of soybean seed developmental stage-specific and tissue-specific miRNA targets by degradome sequencing

(2012) Md Shamimuzzaman et al.   BMC GENOMICS

RNA Degradation in Saccharomyces cerevisae

(2012) Roy Parker   GENETICS

Evolutionary conservation of codon optimality reveals hidden signatures of cotranslational folding

(2012) Sebastian Pechmann et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

DREME: motif discovery in transcription factor ChIP-seq data

(2011) Timothy L. Bailey   BIOINFORMATICS

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

Bacterial persistence by RNA endonucleases

(2011) Etienne Maisonneuve et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Receptor for activated C kinase 1 stimulates nascent polypeptide-dependent translation arrest

(2010) Kazushige Kuroha et al.   EMBO REPORTS

Minireview: Global Regulation and Dynamics of Ribonucleic Acid

(2010) Jack D. Keene   ENDOCRINOLOGY

Co-translational mRNA decay in Saccharomyces cerevisiae

(2009) Wenqian Hu et al.   NATURE

Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling

(2009) N. T. Ingolia et al.   SCIENCE

Endogenous siRNA and miRNA Targets Identified by Sequencing of the Arabidopsis Degradome

(2008) Charles Addo-Quaye et al.   CURRENT BIOLOGY

A Link between RNA Metabolism and Silencing Affecting Arabidopsis Development

(2008) Brian D. Gregory et al.   DEVELOPMENTAL CELL

Global identification of microRNA–target RNA pairs by parallel analysis of RNA ends

(2008) Marcelo A German et al.   NATURE BIOTECHNOLOGY