Structure and DNA damage-dependent derepression mechanism for the XRE family member DG-DdrO

A dual role in regulation and toxicity for the disordered N-terminus of the toxin GraT

(2019) Ariel Talavera et al.   Nature Communications

The Human Transcription Factors

(2018) Samuel A. Lambert et al.   CELL

DdrI, a cAMP Receptor Protein Family Member, Acts as a Major Regulator for Adaptation of Deinococcus radiodurans to Various Stresses

(2018) Laura Meyer et al.   JOURNAL OF BACTERIOLOGY

A stable mode of bookmarking by TBP recruits RNA polymerase II to mitotic chromosomes

(2018) Sheila S Teves et al.   eLife

Gfh factors and NusA cooperate to stimulate transcriptional pausing and termination

(2017) Aleksei Agapov et al.   FEBS LETTERS

Across the tree of life, radiation resistance is governed by antioxidant Mn2+, gauged by paramagnetic resonance

(2017) Ajay Sharma et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conservation and diversity of the IrrE/DdrO-controlled radiation response in radiation-resistant Deinococcus bacteria

(2017) Laurence Blanchard et al.   MicrobiologyOpen

Production, biophysical characterization and crystallization of Pseudomonas putida GraA and its complexes with GraT and the graTA operator

(2017) Ariel Talavera et al.   Acta Crystallographica Section F-Structural Biology Communications

Regulation of transcription initiation by Gfh factors from Deinococcus radiodurans

(2016) A. Agapov et al.   BIOCHEMICAL JOURNAL

Dali server update

(2016) Liisa Holm et al.   NUCLEIC ACIDS RESEARCH

Regulation of transcriptional pausing through the secondary channel of RNA polymerase

(2016) Daria Esyunina et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

AnArabidopsisTranscriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors

(2015) Jinpu Jin et al.   MOLECULAR BIOLOGY AND EVOLUTION

DdrO is an essential protein that regulates the radiation desiccation response and the apoptotic-like cell death in the radioresistantDeinococcus radioduransbacterium

(2015) Alice Devigne et al.   MOLECULAR MICROBIOLOGY

HipBA–promoter structures reveal the basis of heritable multidrug tolerance

(2015) Maria A. Schumacher et al.   NATURE

Protease Activity of PprI Facilitates DNA Damage Response: Mn(2+)-Dependence and Substrate Sequence-Specificity of the Proteolytic Reaction

(2015) Yunguang Wang et al.   PLoS One

Radiation response inDeinococcus deserti: IrrE is a metalloprotease that cleaves repressor protein DdrO

(2014) Monika Ludanyi et al.   MOLECULAR MICROBIOLOGY

The bacterial antitoxin HipB establishes a ternary complex with operator DNA and phosphorylated toxin HipA to regulate bacterial persistence

(2014) Yurong Wen et al.   NUCLEIC ACIDS RESEARCH

Neisseria conserved protein DMP19 is a DNA mimic protein that prevents DNA binding to a hypothetical nitrogen-response transcription factor

(2012) Hao-Ching Wang et al.   NUCLEIC ACIDS RESEARCH

Oxidative Stress Resistance in Deinococcus radiodurans

(2011) D. Slade et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Interconversion between bound and free conformations of LexA orchestrates the bacterial SOS response

(2011) Matej Butala et al.   NUCLEIC ACIDS RESEARCH

TBP-related factors: a paradigm of diversity in transcription initiation

(2011) Waseem Akhtar et al.   Cell and Bioscience

Features and development ofCoot

(2010) P. Emsley et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Structure of theEscherichia coliAntitoxin MqsA (YgiT/b3021) Bound to Its Gene Promoter Reveals Extensive Domain Rearrangements and the Specificity of Transcriptional Regulation

(2010) Breann L. Brown et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Structure of the LexA–DNA complex and implications for SOS box measurement

(2010) Adrianna P. P. Zhang et al.   NATURE

Crystal Structure of the IrrE Protein, a Central Regulator of DNA Damage Repair in Deinococcaceae

(2009) Andreja Vujičić-Žagar et al.   JOURNAL OF MOLECULAR BIOLOGY

The bacterial LexA transcriptional repressor

(2008) M. Butala et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Deinococcus radiodurans: What Belongs to the Survival Kit?

(2008) Melanie Blasius et al.   CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY

DrRRA: a novel response regulator essential for the extreme radioresistance of Deinococcus radiodurans

(2008) Liangyan Wang et al.   MOLECULAR MICROBIOLOGY

A Novel OxyR Sensor and Regulator of Hydrogen Peroxide Stress with One Cysteine Residue in Deinococcus radiodurans

(2008) Huan Chen et al.   PLoS One