Comparative genomics reveals unique wood‐decay strategies and fruiting body development in the Schizophyllaceae

Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi

(2019) Krisztina Krizsán et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional analysis of a pathogenesis-related thaumatin-like protein gene TaLr35PR5 from wheat induced by leaf rust fungus

(2018) Jiarui Zhang et al.   BMC PLANT BIOLOGY

Comparative transcriptome analysis of dikaryotic mycelia and mature fruiting bodies in the edible mushroom Lentinula edodes

(2018) Ha-Yeon Song et al.   Scientific Reports

Secretome Analysis from the Ectomycorrhizal Ascomycete Cenococcum geophilum

(2018) Maíra de Freitas Pereira et al.   Frontiers in Microbiology

Blue light exposure and nutrient conditions influence the expression of genes involved in simultaneous hyphal knot formation in Coprinopsis cinerea

(2018) Yuichi Sakamoto et al.   MICROBIOLOGICAL RESEARCH

Comparative transcriptomics in human and mouse

(2017) Alessandra Breschi et al.   NATURE REVIEWS GENETICS

Expression analysis and functional characterization of a pathogen-induced thaumatin-like gene in wheat conferring enhanced resistance to Puccinia triticina

(2017) Yanjun Zhang et al.   Journal of Plant Interactions

A role for small secreted proteins (SSPs) in a saprophytic fungal lifestyle: Ligninolytic enzyme regulation in Pleurotus ostreatus

(2017) Daria Feldman et al.   Scientific Reports

The ancestral levels of transcription and the evolution of sexual phenotypes in filamentous fungi

(2017) Frances Trail et al.   PLoS Genetics

Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria

(2017) György Sipos et al.   Nature Ecology & Evolution

Transcription factors of Schizophyllum commune involved in mushroom formation and modulation of vegetative growth

(2017) Jordi F. Pelkmans et al.   Scientific Reports

The transcriptional regulator c2h2 accelerates mushroom formation in Agaricus bisporus

(2016) Jordi F. Pelkmans et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Feruloyl esterases from Schizophyllum commune to treat food industry side-streams

(2016) Annabel Nieter et al.   BIORESOURCE TECHNOLOGY

Comparative analysis of the secretomes of Schizophyllum commune and other wood-decay basidiomycetes during solid-state fermentation reveals its unique lignocellulose-degrading enzyme system

(2016) Ning Zhu et al.   Biotechnology for Biofuels

TheCoprinopsis cinereaTup1 homologue Cag1 is required for gill formation during fruiting body morphogenesis

(2016) Ryo Masuda et al.   Biology Open

Schizophyllum commune has an extensive and functional alternative splicing repertoire

(2016) Thies Gehrmann et al.   Scientific Reports

Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii

(2015) Dimitrios Floudas et al.   FUNGAL GENETICS AND BIOLOGY

Mushroom Lectins: Specificity, Structure and Bioactivity Relevant to Human Disease

(2015) Mohamed Hassan et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Comparative Genomics of Early-Diverging Mushroom-Forming Fungi Provides Insights into the Origins of Lignocellulose Decay Capabilities

(2015) László G. Nagy et al.   MOLECULAR BIOLOGY AND EVOLUTION

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Comparative Analysis of Secretomes from Ectomycorrhizal Fungi with an Emphasis on Small-Secreted Proteins

(2015) Clement Pellegrin et al.   Frontiers in Microbiology

How do Agaricomycetes shape their fruiting bodies? 1. Morphological aspects of development

(2015) Ursula Kües et al.   Fungal Biology Reviews

A Novel Expansin Protein from the White-Rot Fungus Schizophyllum commune

(2015) Omar Eduardo Tovar-Herrera et al.   PLoS One

Strand-Specific RNA-Seq Analyses of Fruiting Body Development in Coprinopsis cinerea

(2015) Hajime Muraguchi et al.   PLoS One

Cerato-platanins: a fungal protein family with intriguing properties and application potential

(2014) Romana Gaderer et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Comparative transcriptomics of the model mushroom Coprinopsis cinerea reveals tissue-specific armories and a conserved circuitry for sexual development

(2014) David Plaza et al.   BMC GENOMICS

Elucidating how the saprophytic fungus Aspergillus nidulans uses the plant polyester suberin as carbon source

(2014) Isabel Martins et al.   BMC GENOMICS

De Novo Assembly of Auricularia polytricha Transcriptome Using Illumina Sequencing for Gene Discovery and SSR Marker Identification

(2014) Yan Zhou et al.   PLoS One

Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi

(2014) Robert Riley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

5'-Serial Analysis of Gene Expression studies reveal a transcriptomic switch during fruiting body development in Coprinopsis cinerea

(2013) Chi Keung Cheng et al.   BMC GENOMICS

A DNA Damage Checkpoint Pathway Coordinates the Division of Dikaryotic Cells in the Ink Cap Mushroom Coprinopsis cinerea

(2013) C. de Sena-Tomas et al.   GENETICS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Distribution and bioinformatic analysis of the cerato-platanin protein family in Dikarya

(2013) Hongxin Chen et al.   MYCOLOGIA

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

MycoCosm portal: gearing up for 1000 fungal genomes

(2013) Igor V. Grigoriev et al.   NUCLEIC ACIDS RESEARCH

Regulation of genes involved in cell wall synthesis and structure duringUstilago maydisdimorphism

(2012) Mariana Robledo-Briones et al.   FEMS YEAST RESEARCH

Schizophyllum commune as a Ubiquitous Plant Parasite

(2012) Shuhei TAKEMOTO et al.   JARQ-JAPAN AGRICULTURAL RESEARCH QUARTERLY

Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen

(2012) Åke Olson et al.   NEW PHYTOLOGIST

Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche

(2012) E. Morin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

(2012) D. Floudas et al.   SCIENCE

Hydrophobins—Unique Fungal Proteins

(2012) Jagadeesh Bayry et al.   PLoS Pathogens

Endo-β-1,3-Glucanase GLU1, from the Fruiting Body of Lentinula edodes, Belongs to a New Glycoside Hydrolase Family

(2011) Yuichi Sakamoto et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

An endo-β-1,6-glucanase involved in Lentinula edodes fruiting body autolysis

(2011) Naotake Konno et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Transcription factor genes of Schizophyllum commune involved in regulation of mushroom formation

(2011) Robin A. Ohm et al.   MOLECULAR MICROBIOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

phytools: an R package for phylogenetic comparative biology (and other things)

(2011) Liam J. Revell   Methods in Ecology and Evolution

Identification, Characterization, and Biosynthesis of a NovelN-Glycan Modification in the Fruiting Body of the BasidiomyceteCoprinopsis cinerea

(2010) Reto Buser et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Genome sequence of the model mushroom Schizophyllum commune

(2010) Robin A Ohm et al.   NATURE BIOTECHNOLOGY

Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)

(2010) J. E. Stajich et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Novel Coprinopsis cinerea Polyesterase That Hydrolyzes Cutin and Suberin

(2009) H. Kontkanen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

SIZE-CORRECTION AND PRINCIPAL COMPONENTS FOR INTERSPECIFIC COMPARATIVE STUDIES

(2009) Liam J. Revell   EVOLUTION

Genome, transcriptome, and secretome analysis of wood decay fungusPostia placentasupports unique mechanisms of lignocellulose conversion

(2009) Diego Martinez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Purification and Characterization of a Novel Exo-β-1,3-1,6-glucanase from the Fruiting Body of the Edible Mushroom Enoki (Flammulina velutipes)

(2008) Kenji FUKUDA et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

A genome survey of Moniliophthora perniciosa gives new insights into Witches' Broom Disease of cacao

(2008) Jorge MC Mondego et al.   BMC GENOMICS

Hydrophobins Sc3 and Sc4 gene expression in mounds, fruiting bodies and vegetative hyphae of Schizophyllum commune

(2007) Goutami Banerjee et al.   FUNGAL GENETICS AND BIOLOGY

The exp1 gene essential for pileus expansion and autolysis of the inky cap mushroom Coprinopsis cinerea (Coprinus cinereus) encodes an HMG protein

(2007) Hajime Muraguchi et al.   FUNGAL GENETICS AND BIOLOGY