hfAIM: A reliable bioinformatics approach for in silico genome-wide identification of autophagy-associated Atg8-interacting motifs in various organisms

Global Analysis of the Role of Autophagy in Cellular Metabolism and Energy Homeostasis in Arabidopsis Seedlings under Carbon Starvation

(2015) Tamar Avin-Wittenberg et al.   PLANT CELL

Plant autophagy is responsible for peroxisomal transition and plays an important role in the maintenance of peroxisomal quality

(2014) Michitaro Shibata et al.   Autophagy

Plant cell remodeling by autophagy

(2014) Jimi Kim et al.   Autophagy

iLIR

(2014) Ioanna Kalvari et al.   Autophagy

Organ-specific quality control of plant peroxisomes is mediated by autophagy

(2014) K. Yoshimoto et al.   JOURNAL OF CELL SCIENCE

Cargo binding to Atg19 unmasks additional Atg8 binding sites to mediate membrane–cargo apposition during selective autophagy

(2014) Justyna Sawa-Makarska et al.   NATURE CELL BIOLOGY

Stitching together the Multiple Dimensions of Autophagy Using Metabolomics and Transcriptomics Reveals Impacts on Metabolism, Development, and Plant Responses to the Environment in Arabidopsis

(2014) C. Masclaux-Daubresse et al.   PLANT CELL

AUTOPHAGY-RELATED11 Plays a Critical Role in General Autophagy- and Senescence-Induced Mitophagy in Arabidopsis

(2014) F. Li et al.   PLANT CELL

Arabidopsis ATG8-INTERACTING PROTEIN1 Is Involved in Autophagy-Dependent Vesicular Trafficking of Plastid Proteins to the Vacuole

(2014) S. Michaeli et al.   PLANT CELL

Functions of autophagy in plant carbon and nitrogen metabolism

(2014) Chenxia Ren et al.   Frontiers in Plant Science

Lumenal peroxisomal protein aggregates are removed by concerted fission and autophagy events

(2013) Selvambigai Manivannan et al.   Autophagy

Substrate recognition in selective autophagy and the ubiquitin–proteasome system

(2013) Anne Schreiber et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

The scaffold protein EPG-7 links cargo–receptor complexes with the autophagic assembly machinery

(2013) Long Lin et al.   JOURNAL OF CELL BIOLOGY

Alternative fates of newly formed PrPSc upon prion conversion on the plasma membrane

(2013) R. Goold et al.   JOURNAL OF CELL SCIENCE

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Advanced Proteomic Analyses Yield a Deep Catalog of Ubiquitylation Targets inArabidopsis

(2013) Do-Young Kim et al.   PLANT CELL

Autophagy-Related Proteins Are Required for Degradation of Peroxisomes in Arabidopsis Hypocotyls during Seedling Growth

(2013) J. Kim et al.   PLANT CELL

A BAR-Domain Protein SH3P2, Which Binds to Phosphatidylinositol 3-Phosphate and ATG8, Regulates Autophagosome Formation in Arabidopsis

(2013) X. Zhuang et al.   PLANT CELL

Disrupting Autophagy Restores Peroxisome Function to an Arabidopsis lon2 Mutant and Reveals a Role for the LON2 Protease in Peroxisomal Matrix Protein Degradation

(2013) L. M. Farmer et al.   PLANT CELL

Highly Oxidized Peroxisomes Are Selectively Degraded via Autophagy in Arabidopsis

(2013) M. Shibata et al.   PLANT CELL

NBR1-Mediated Selective Autophagy Targets Insoluble Ubiquitinated Protein Aggregates in Plant Stress Responses

(2013) Jie Zhou et al.   PLoS Genetics

Genetic Dissection of Peroxisome-Associated Matrix Protein Degradation in Arabidopsis thaliana

(2012) S. E. Burkhart et al.   GENETICS

ATG8 Family Proteins Act as Scaffolds for Assembly of the ULK Complex

(2012) Endalkachew Ashenafi Alemu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Noncanonical recognition and UBL loading of distinct E2s by autophagy-essential Atg7

(2012) Masaya Yamaguchi et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Plant Peroxisomes: Biogenesis and Function

(2012) Jianping Hu et al.   PLANT CELL

A New Type of Compartment, Defined by Plant-Specific Atg8-Interacting Proteins, Is Induced upon Exposure of Arabidopsis Plants to Carbon Starvation

(2012) A. Honig et al.   PLANT CELL

Autophagy: a multifaceted intracellular system for bulk and selective recycling

(2012) Faqiang Li et al.   TRENDS IN PLANT SCIENCE

Uncovering Arabidopsis Membrane Protein Interactome Enriched in Transporters Using Mating-Based Split Ubiquitin Assays and Classification Models

(2012) Jin Chen et al.   Frontiers in Plant Science

Plant NBR1 is a selective autophagy substrate and a functional hybrid of the mammalian autophagic adapters NBR1 and p62/SQSTM1

(2011) Steingrim Svenning et al.   Autophagy

Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis

(2011) K. Klopffleisch et al.   Molecular Systems Biology

ArabidopsisABERRANT PEROXISOME MORPHOLOGY9 Is a Peroxin That Recruits the PEX1-PEX6 Complex to Peroxisomes

(2011) Shino Goto et al.   PLANT CELL

Variations on a theme: plant autophagy in comparison to yeast and mammals

(2011) Tamar Avin-Wittenberg et al.   PROTOPLASMA

Evidence for Network Evolution in an Arabidopsis Interactome Map

(2011) et al.   SCIENCE

Phosphorylation of the Autophagy Receptor Optineurin Restricts Salmonella Growth

(2011) P. Wild et al.   SCIENCE

Autophagy in plants and phytopathogens

(2010) Kohki Yoshimoto et al.   FEBS LETTERS

Atg8-family interacting motif crucial for selective autophagy

(2010) Nobuo N. Noda et al.   FEBS LETTERS

Genetic classification and mutational spectrum of more than 600 patients with a Zellweger syndrome spectrum disorder

(2010) Merel S. Ebberink et al.   HUMAN MUTATION

The NMR structure of the autophagy-related protein Atg8

(2010) Hiroyuki Kumeta et al.   JOURNAL OF BIOMOLECULAR NMR

Network organization of the human autophagy system

(2010) Christian Behrends et al.   NATURE

Different functions of the C3HC4 zinc RING finger peroxins PEX10, PEX2, and PEX12 in peroxisome formation and matrix protein import

(2010) J. Prestele et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ANCHOR: web server for predicting protein binding regions in disordered proteins

(2009) Z. Dosztanyi et al.   BIOINFORMATICS

PeroxisomeDB 2.0: an integrative view of the global peroxisomal metabolome

(2009) Agatha Schlüter et al.   NUCLEIC ACIDS RESEARCH

Prediction of Protein Binding Regions in Disordered Proteins

(2009) Bálint Mészáros et al.   PLoS Computational Biology

PpAtg30 Tags Peroxisomes for Turnover by Selective Autophagy

(2008) Jean-Claude Farré et al.   DEVELOPMENTAL CELL

The peroxin Pex14p is involved in LC3-dependent degradation of mammalian peroxisomes

(2008) Sayuri Hara-Kuge et al.   EXPERIMENTAL CELL RESEARCH

Structural basis of target recognition by Atg8/LC3 during selective autophagy

(2008) Nobuo N. Noda et al.   GENES TO CELLS