Structure and Dynamics of Mono- vs. Doubly Lipidated Rab5 in Membranes

The Lateral Organization and Mobility of Plasma Membrane Components

(2019) Ken Jacobson et al.   CELL

Characterization of Lipid–Protein Interactions and Lipid-Mediated Modulation of Membrane Protein Function through Molecular Simulation

(2019) Melanie P. Muller et al.   CHEMICAL REVIEWS

Molecular Insights into the Roles of Rab Proteins in Intracellular Dynamics and Neurodegenerative Diseases

(2018) Shobi Veleri et al.   NEUROMOLECULAR MEDICINE

Probing the druggability of membrane-bound Rab5 by molecular dynamics simulations

(2017) Eileen Edler et al.   JOURNAL OF ENZYME INHIBITION AND MEDICINAL CHEMISTRY

Synuclein impairs trafficking and signaling of BDNF in a mouse model of Parkinson’s disease

(2017) Fang Fang et al.   Scientific Reports

Interactions of peripheral proteins with model membranes as viewed by molecular dynamics simulations

(2014) Antreas C. Kalli et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

CHARMM All-Atom Additive Force Field for Sphingomyelin: Elucidation of Hydrogen Bonding and of Positive Curvature

(2014) Richard M. Venable et al.   BIOPHYSICAL JOURNAL

Lessons from computer simulations of Ras proteins in solution and in membrane

(2013) Priyanka Prakash et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Effects of Membrane Trafficking on Signaling by Receptor Tyrosine Kinases

(2013) M. Miaczynska   Cold Spring Harbor Perspectives in Biology

Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone ϕ, ψ and Side-Chain χ1 and χ2 Dihedral Angles

(2012) Robert B. Best et al.   Journal of Chemical Theory and Computation

The Interaction Properties of the Human Rab GTPase Family – A Comparative Analysis Reveals Determinants of Molecular Binding Selectivity

(2012) Matthias Stein et al.   PLoS One

Update of the Cholesterol Force Field Parameters in CHARMM

(2011) Joseph B. Lim et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Development of the CHARMM Force Field for Lipids

(2011) R. W. Pastor et al.   Journal of Physical Chemistry Letters

Endocytic proteins in the regulation of nuclear signaling, transcription and tumorigenesis

(2009) Beata Pyrzynska et al.   Molecular Oncology

Rab geranylgeranylation occurs preferentially via the pre-formed REP–RGGT complex and is regulated by geranylgeranyl pyrophosphate

(2008) Rudi A. Baron et al.   BIOCHEMICAL JOURNAL

Membrane binding of lipidated Ras peptides and proteins — The structural point of view

(2008) Luc Brunsveld et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Rab5 modulates aggregation and toxicity of mutant huntingtin through macroautophagy in cell and fly models of Huntington disease

(2008) B. Ravikumar et al.   JOURNAL OF CELL SCIENCE

Biomolecular simulations of membranes: Physical properties from different force fields

(2008) Shirley W. I. Siu et al.   JOURNAL OF CHEMICAL PHYSICS

Discontinuous movement of mRNP particles in nucleoplasmic regions devoid of chromatin

(2008) J. P. Siebrasse et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Probing Intranuclear Environments at the Single-Molecule Level

(2007) David Grünwald et al.   BIOPHYSICAL JOURNAL