The phylogenomics of diversification on an island: applying anchored hybrid enrichment to New Zealand Leptospermum scoparium (Myrtaceae)

Structure_threader : An improved method for automation and parallelization of programs structure , fastStructure and MavericK on multicore CPU systems

(2017) Francisco Pina-Martins et al.   Molecular Ecology Resources

Expanding anchored hybrid enrichment to resolve both deep and shallow relationships within the spider tree of life

(2016) Chris A. Hamilton et al.   BMC EVOLUTIONARY BIOLOGY

Fire–vegetation feedbacks and alternative states: common mechanisms of temperate forest vulnerability to fire in southern South America and New Zealand

(2016) T Kitzberger et al.   NEW ZEALAND JOURNAL OF BOTANY

ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes

(2015) Siavash Mirarab et al.   BIOINFORMATICS

Comparing species tree estimation with large anchored phylogenomic and small Sanger-sequenced molecular datasets: an empirical study on Malagasy pseudoxyrhophiine snakes

(2015) Sara Ruane et al.   BMC EVOLUTIONARY BIOLOGY

Resolving phylogenetic relationships of the recently radiated carnivorous plant genus Sarracenia using target enrichment

(2015) Jessica D. Stephens et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Interpreting the modern distribution of Myrtaceae using a dated molecular phylogeny

(2015) Andrew H. Thornhill et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing

(2015) Richard O. Prum et al.   NATURE

Quartet Inference from SNP Data Under the Coalescent Model

(2014) Julia Chifman et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Historical biogeography of Haloragaceae: An out-of-Australia hypothesis with multiple intercontinental dispersals

(2014) Ling-Yun Chen et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Native New Zealand forget-me-nots (Myosotis, Boraginaceae) comprise a Pleistocene species radiation with very low genetic divergence

(2014) Heidi M. Meudt et al.   PLANT SYSTEMATICS AND EVOLUTION

Coalescent versus Concatenation Methods and the Placement of Amborella as Sister to Water Lilies

(2014) Zhenxiang Xi et al.   SYSTEMATIC BIOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Geographical and environmental gradients shape phenotypic trait variation and genetic structure inPopulus trichocarpa

(2013) Athena D. McKown et al.   NEW PHYTOLOGIST

New insights into Trimezieae (Iridaceae) phylogeny: what do molecular data tell us?

(2012) Juliana Lovo et al.   ANNALS OF BOTANY

An expanded molecular phylogeny of the southern bluebells (Wahlenbergia, Campanulaceae) from Australia and New Zealand

(2012) Jessica M. Prebble et al.   AUSTRALIAN SYSTEMATIC BOTANY

The venom-gland transcriptome of the eastern diamondback rattlesnake (Crotalus adamanteus)

(2012) Darin R Rokyta et al.   BMC GENOMICS

Estimates of Genetic Differentiation Measured by FST Do Not Necessarily Require Large Sample Sizes When Using Many SNP Markers

(2012) Eva-Maria Willing et al.   PLoS One

Anchored Hybrid Enrichment for Massively High-Throughput Phylogenomics

(2012) Alan R. Lemmon et al.   SYSTEMATIC BIOLOGY

RADSeq: next-generation population genetics

(2011) J. W. Davey et al.   Briefings in Functional Genomics

New World Origins of Southwest Pacific Gesneriaceae: Multiple Movements Across and Within the South Pacific

(2011) Vincent L. Woo et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Are pollen fossils useful for calibrating relaxed molecular clock dating of phylogenies? A comparative study using Myrtaceae

(2011) Andrew H. Thornhill et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses

(2010) Ben C Stöver et al.   BMC BIOINFORMATICS

Testing species limits of New ZealandPlantago(Plantaginaceae) using internal transcribed spacer (ITS) DNA sequences

(2010) ML Tay et al.   NEW ZEALAND JOURNAL OF BOTANY

The Accuracy of Species Tree Estimation under Simulation: A Comparison of Methods

(2010) Adam D. Leaché et al.   SYSTEMATIC BIOLOGY

Species delimitation and phylogeny of a New Zealand plant species radiation

(2009) Heidi M Meudt et al.   BMC EVOLUTIONARY BIOLOGY

Reconstructing the species phylogeny of Pseudopanax (Araliaceae), a genus of hybridising trees

(2009) Leon R. Perrie et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A Pleistocene inter-tribal allopolyploidization event precedes the species radiation of Pachycladon (Brassicaceae) in New Zealand

(2009) Simon Joly et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogeny of Veronica in the Southern and Northern Hemispheres based on plastid, nuclear ribosomal and nuclear low-copy DNA

(2009) Dirk C. Albach et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS