Genome comparison between clinical and environmental strains of Herbaspirillum seropedicae reveals a potential new emerging bacterium adapted to human hosts

HMMER web server: 2018 update

(2018) Simon C Potter et al.   NUCLEIC ACIDS RESEARCH

Genome-Based Characterization of Biological Processes That Differentiate Closely Related Bacteria

(2018) Marike Palmer et al.   Frontiers in Microbiology

PRISM 3: expanded prediction of natural product chemical structures from microbial genomes

(2017) Michael A. Skinnider et al.   NUCLEIC ACIDS RESEARCH

Genomics and taxonomy in diagnostics for food security: soft-rotting enterobacterial plant pathogens

(2016) Leighton Pritchard et al.   Analytical Methods

Serobactins-mediated iron acquisition systems optimize competitive fitness of H erbaspirillum seropedicae inside rice plants

(2016) Federico Rosconi et al.   ENVIRONMENTAL MICROBIOLOGY

GIPSy: Genomic island prediction software

(2016) Siomar C. Soares et al.   JOURNAL OF BIOTECHNOLOGY

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

(2016) Minoru Kanehisa et al.   JOURNAL OF MOLECULAR BIOLOGY

EDGAR 2.0: an enhanced software platform for comparative gene content analyses

(2016) Jochen Blom et al.   NUCLEIC ACIDS RESEARCH

PHASTER: a better, faster version of the PHAST phage search tool

(2016) David Arndt et al.   NUCLEIC ACIDS RESEARCH

GFinisher: a new strategy to refine and finish bacterial genome assemblies

(2016) Dieval Guizelini et al.   Scientific Reports

Fatal case of Herbaspirillum seropedicae bacteremia secondary to pneumonia in an end-stage renal disease patient with multiple myeloma

(2015) Nuntra Suwantarat et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

Severe Community-Acquired Pneumonia with Bacteremia Caused by Herbaspirillum aquaticum or Herbaspirillum huttiense in an Immune-Competent Adult

(2015) Hariharan Regunath et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance inKlebsiella pneumoniae, an urgent threat to public health

(2015) Kathryn E. Holt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Cluster and Sporadic Cases of Herbaspirillum Species Infections in Patients With Cancer

(2014) R. F. Chemaly et al.   CLINICAL INFECTIOUS DISEASES

Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology

(2014) Molly K Gibson et al.   ISME Journal

Biochemical Characteristics, Adhesion, and Cytotoxicity of Environmental and Clinical Isolates of Herbaspirillum spp.

(2014) Ana C. Q. Marques et al.   JOURNAL OF CLINICAL MICROBIOLOGY

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

The genome of the endophytic bacterium H. frisingense GSF30T identifies diverse strategies in the Herbaspirillum genus to interact with plants

(2013) Daniel Straub et al.   Frontiers in Microbiology

The type III secretion system is necessary for the development of a pathogenic and endophytic interaction between Herbaspirillum rubrisubalbicans and Poaceae

(2012) Maria Schmidt et al.   BMC MICROBIOLOGY

Extracellular M. tuberculosis DNA Targets Bacteria for Autophagy by Activating the Host DNA-Sensing Pathway

(2012) Robert O. Watson et al.   CELL

Identification and structural characterization of serobactins, a suite of lipopeptide siderophores produced by the grass endophyteHerbaspirillum seropedicae

(2012) Federico Rosconi et al.   ENVIRONMENTAL MICROBIOLOGY

Genomic comparison of the endophyte Herbaspirillum seropedicaeSmR1 and the phytopathogen Herbaspirillum rubrisubalbicansM1 by suppressive subtractive hybridization and partial genome sequencing

(2012) Rose A. Monteiro et al.   FEMS MICROBIOLOGY ECOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Herbaspirillum-plant interactions: microscopical, histological and molecular aspects

(2012) Rose Adele Monteiro et al.   PLANT AND SOIL

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

(2011) Nabil-Fareed Alikhan et al.   BMC GENOMICS

New roles for bacterial siderophores in metal transport and tolerance

(2011) Isabelle J. Schalk et al.   ENVIRONMENTAL MICROBIOLOGY

Genomic acquisition of a capsular polysaccharide virulence cluster by non-pathogenic Burkholderia isolates

(2010) Bernice Meng Qi Sim et al.   GENOME BIOLOGY

Insights into the evolution of sialic acid catabolism among bacteria

(2009) Salvador Almagro-Moreno et al.   BMC EVOLUTIONARY BIOLOGY

Autophagy, Immunity, and Microbial Adaptations

(2009) Vojo Deretic et al.   Cell Host & Microbe

Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database

(2008) Tim Carver et al.   BIOINFORMATICS

Recovery of Herbaspirillum Species from Persons with Cystic Fibrosis

(2008) T. Spilker et al.   JOURNAL OF CLINICAL MICROBIOLOGY