Model annotation and discovery with the Physiome Model Repository

SemGen: a tool for semantics-based annotation and composition of biosimulation models

(2018) Maxwell L Neal et al.   BIOINFORMATICS

DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants

(2016) Janet Piñero et al.   NUCLEIC ACIDS RESEARCH

The Human Physiome: how standards, software and innovative service infrastructures are providing the building blocks to make it achievable

(2016) David Nickerson et al.   Interface Focus

Semantic biomedical resource discovery: a Natural Language Processing framework

(2015) Pepi Sfakianaki et al.   BMC Medical Informatics and Decision Making

ChEBI in 2016: Improved services and an expanding collection of metabolites

(2015) Janna Hastings et al.   NUCLEIC ACIDS RESEARCH

DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes

(2015) J. Pinero et al.   Database-The Journal of Biological Databases and Curation

OpenCOR: a modular and interoperable approach to computational biology

(2015) Alan Garny et al.   Frontiers in Physiology

Health Recommender Systems: Concepts, Requirements, Technical Basics and Challenges

(2014) Martin Wiesner et al.   International Journal of Environmental Research and Public Health

A Reappraisal of How to Build Modular, Reusable Models of Biological Systems

(2014) Maxwell L. Neal et al.   PLoS Computational Biology

Recommender systems survey

(2013) J. Bobadilla et al.   KNOWLEDGE-BASED SYSTEMS

Open PHACTS: semantic interoperability for drug discovery

(2012) Antony J. Williams et al.   DRUG DISCOVERY TODAY

Social knowledge-based recommender system. Application to the movies domain

(2012) Walter Carrer-Neto et al.   EXPERT SYSTEMS WITH APPLICATIONS

The Physiome Model Repository 2

(2011) T. Yu et al.   BIOINFORMATICS

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Physical Properties of Biological Entities: An Introduction to the Ontology of Physics for Biology

(2011) Daniel L. Cook et al.   PLoS One

Multiple ontologies in action: Composite annotations for biosimulation models

(2010) John H. Gennari et al.   JOURNAL OF BIOMEDICAL INFORMATICS

A vision and strategy for the virtual physiological human in 2010 and beyond

(2010) P. Hunter et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES

Saint: a lightweight integration environment for model annotation

(2009) Allyson L. Lister et al.   BIOINFORMATICS

Towards pharmacogenomics knowledge discovery with the semantic web

(2009) M. Dumontier et al.   BRIEFINGS IN BIOINFORMATICS