4.8 Review

Nucleic acid diagnostics on the total integrated lab-on-a-disc for point-of-care testing

Journal

BIOSENSORS & BIOELECTRONICS
Volume 141, Issue -, Pages -

Publisher

ELSEVIER ADVANCED TECHNOLOGY
DOI: 10.1016/j.bios.2019.111466

Keywords

Centrifugal microfluidics; Lab-on-a-disc; Total integration; Nucleic acid; Molecular diagnostics; Point-of-care testing

Funding

  1. Korean Health Technology R&D Project, Ministry of Health & Welfare, Republic of Korea [HI13C1232]
  2. Engineering Research Center of Excellence Program of Korea Ministry of Science and ICT (MSIT)/National Research Foundation of Korea, Republic of Korea [2014R1A5A1009799]

Ask authors/readers for more resources

Since the emergence of the lab-on-a-chip technology in 1979, a variety of microfluidic devices have been developed and utilized for chemical and biological applications. Among the microfluidic devices, the centrifugal microfluidic device or lab-on-a-disc (LOAD) has advanced remarkably due to simple operation by the rotation, total integration, and high-throughput capability. Moreover, the centrifugal microdevices do not need complex tubing and pumping systems, which render them ideal for point-of-care testing (POCT) system. Owing to these characteristics, the centrifugal microdevices have been extensively used for bio-diagnostics. In particular, molecular diagnostics, which are regarded as an essential method for definite determination of the targets related with diseases, have been widely applied on the LOAD. In this review paper, we focus on the molecular diagnostics on the LOAD. The steps for the molecular diagnostics such as cell lysis, genome purification, gene amplification, amplicon detection, and data analysis can be performed individually or totally on the LOAD. Future directions of the LOAD in the fields of bio-diagnostics is to realize POCT for U-healthcare monitoring. In this context, the latest LOAD strategies for molecular diagnostics are summarized in this review paper, which would provide an insight for future POCT platform.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.8
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Biophysics

An internet of things-based point-of-care device for direct reverse-transcription-loop mediated isothermal amplification to identify SARS-CoV-2

Huynh Quoc Nguyen, Hoang Khang Bui, Vu Minh Phan, Tae Seok Seo

Summary: The urgent need for rapid and accurate testing tools for SARS-CoV-2 detection can be met by IoT-based diagnostic devices, which can provide real-time monitoring with high sensitivity and accuracy.

BIOSENSORS & BIOELECTRONICS (2022)

Article Biophysics

A handheld-type total integrated capillary electrophoresis system for SARS-CoV-2 diagnostics: Power, fluorescence detection, and data analysis by smartphone

Van Dan Nguyen, Huynh Quoc Nguyen, Khang Hoang Bui, Young Soo Ko, Bum Jun Park, Tae Seok Seo

Summary: The study successfully developed an integrated micro-capillary electrophoresis system controlled by a smartphone, which is efficient and accurate for on-site molecular diagnostics.

BIOSENSORS & BIOELECTRONICS (2022)

Article Chemistry, Analytical

A 3D printed size-tunable flow-focusing droplet microdevice to produce cell-laden hydrogel microspheres

Huynh Quoc Nguyen, Tae Seok Seo

Summary: In this study, a droplet device with controllable droplet size and generation frequency was rapidly prototyped using 3D printing technology. The device utilized a screw-and-nut combination for easy and precise control of the gap height between the dispersed phase outlet and the orifice. The 3D printed device was successfully employed for synthesizing A549 cell-encapsulated microspheres of various sizes, which can be used for drug screening.

ANALYTICA CHIMICA ACTA (2022)

Article Agricultural Engineering

Insights into C1 and C3 assimilation pathways in type I methanotrophic bacterium from co-production of 1,2-propanediol and lactate

Hoa Thi Quynh Le, Eun Yeol Lee

Summary: The study explores the metabolic pathways of methane and methanol to produce 1,2-propanediol (1,2-PDO) using the type I methanotroph Methylotuvimicrobium alcaliphilum 20Z. It finds that the carbon flux from methane to the EMP pathway restricts the production of 1,2-PDO. Co-utilization of C1 substrates and glycerol enhances the production of 1,2-PDO, although lactate is co-produced in higher amounts. The study provides insights into metabolic routes for 1,2-PDO and lactate co-production from C1 and C3 compounds in methanotrophs.

BIORESOURCE TECHNOLOGY (2022)

Article Engineering, Environmental

A highly efficient and versatile genetic engineering toolkit for a methanotroph-based biorefinery

Jiyeong Jeong, Tae Hyun Kim, Nulee Jang, Minji Ko, Seong Keun Kim, Georgii Emelianov, Eugene Rha, Kil Koang Kwon, Haseong Kim, Eun Yeol Lee, Dae-Hee Lee, Hyewon Lee, Seung-Goo Lee

Summary: Methanotrophs have been successfully engineered to produce valuable bioproducts from methane by utilizing a phenol-inducible gene expression system and a CRISPR-based genome editing tool. The engineered strain achieved the highest concentration of synthetic biochemicals produced from methane in methanotrophs.

CHEMICAL ENGINEERING JOURNAL (2023)

Review Engineering, Environmental

Outlook on engineering methylotrophs for one-carbon-based industrial biotechnology

Diep Ngoc Pham, Anh Duc Nguyen, Eun Yeol Lee

Summary: Methane and carbon dioxide are the most abundant greenhouse gases, and reducing their emissions is crucial for mitigating climate change. Utilizing methylotrophic bacteria-based technologies to capture and utilize these gases shows promise in lowering their concentrations. This article highlights the advantages of methylotrophs in bioconversion of methane, CO2, methanol, and formate, and discusses innovative strategies to improve conversion efficiency.

CHEMICAL ENGINEERING JOURNAL (2022)

Article Chemistry, Applied

Optimization of operating conditions for anisole hydrodeoxygenation reaction over Zr-based metal-organic framework supported Pt catalyst

Van Nhieu Le, Dieu-Phuong Phan, Seung-Soo Kim, Eun Yeol Lee, Jinsoo Kim

Summary: By using response surface methodology combined with the central composite design, the operating conditions for catalytic hydrodeoxygenation of anisole were optimized, resulting in high conversion rates. It was found that temperature had the greatest effect on the conversion rate.

FUEL PROCESSING TECHNOLOGY (2022)

Article Biochemistry & Molecular Biology

Reconstructing ethanol oxidation pathway in Pseudomonas putida KT2440 for bio-upgrading of ethanol to biodegradable polyhydroxybutanoates

Linh Thanh Nguyen, Dung Hoang Anh Mai, Arslan Sarwar, Eun Yeol Lee

Summary: This study constructed a production pathway for short-chain-length polyhydroxyalkanoates (PHAs) in P. putida KT2440 and enhanced the product yield by reconstructing the ethanol catabolic pathway. Transcriptome analysis was conducted to gain insights into central metabolic pathways and gene expression patterns in response to substrate changes. Furthermore, the potential of P. putida KT2440 for producing copolymers from different carbon sources was demonstrated.

INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES (2022)

Article Genetics & Heredity

TSSNote-CyaPromBERT: Development of an integrated platform for highly accurate promoter prediction and visualization of Synechococcus sp. and Synechocystis sp. through a state-of-the-art natural language processing model BERT

Dung Hoang Anh Mai, Linh Thanh Nguyen, Eun Yeol Lee

Summary: NLP models have been used to predict and analyze the promoters in freshwater cyanobacteria, with the help of a custom pipeline and an integrated platform. The models achieved high AUROC and F1 scores, indicating their effectiveness in understanding the sequential structure of DNA.

FRONTIERS IN GENETICS (2022)

Article Chemistry, Multidisciplinary

Function of the Speech Recognition of the Smartphone to Automatically Operate a Portable Sample Pretreatment Microfluidic System

Hoang Khang Bui, Vu Minh Phan, Huynh Quoc Nguyen, Van Dan Nguyen, Hiep Van Nguyen, Tae Seok Seo

Summary: We proposed a portable sample pretreatment microsystem that can be operated automatically through speech recognition in a smartphone app. The microsystem includes a microfluidic chip, an air router, pressure and vacuum lines with air pump motors, six 3-way solenoid valves, and a microcontroller with a Bluetooth module. The entire DNA extraction process from pathogenic bacterial samples is controlled by human voice commands, eliminating manual interference and potential infection. The palm-sized microsystem can be powered by a portable battery or a conventional smartphone charger, achieving a DNA extraction efficiency of 70 +/- 5% for Salmonella typhimurium in less than 1 minute.

ACS SENSORS (2023)

Review Biotechnology & Applied Microbiology

Methanotrophs as a reservoir for bioactive secondary metabolites: Pitfalls, insights and promises

Ushasree Mrudulakumari Vasudevan, Dung Hoang Anh Mai, Shyam Krishna, Eun Yeol Lee

Summary: Methanotrophs have the potential to produce various bioactive secondary metabolites including iso-prenoids, polymers, peptides, and vitamins. Genome mining of these microbes revealed the hidden biosynthetic potential of these microbes. Through advanced synthetic biology tools, the central carbon metabolism in methanotrophs can be modified to produce valuable secondary metabolites. This review summarizes the possibilities of developing methanotrophs as microbial chassis for high-value secondary metabolites.

BIOTECHNOLOGY ADVANCES (2023)

Review Chemistry, Multidisciplinary

Production of polyols and polyurethane from biomass: a review

My Ha Tran, Eun Yeol Lee

Summary: This article reviews the methods for producing polyols from vegetable oil, lignin, and carbohydrates, as well as the production of polyurethane from biomass polyols. Conversion of vegetable oil involves epoxidation, hydroformylation, and transesterification, while conversion of lignin involves solvothermal liquefaction, hydroxymethylation, oxypropylation, and phenolation.

ENVIRONMENTAL CHEMISTRY LETTERS (2023)

Article Multidisciplinary Sciences

Comparative genomic analysis of Methylocystis sp. MJC1 as a platform strain for polyhydroxybutyrate biosynthesis

Sanzhar Naizabekov, Seung Woon Hyun, Jeong-Geol Na, Sukhwan Yoon, Ok Kyung Lee, Eun Yeol Lee

Summary: Comparative genomic analysis revealed the potential of newly isolated methanotroph Methylocystis sp. MJC1 as a biodegradable polyhydroxybutyrate (PHB) producer. Under nitrogen-limiting conditions, Methylocystis sp. MJC1 can accumulate up to 44.5% PHB based on dry cell weight. Functional annotation and comparison with other Methylocystis species showed that Methylocystis sp. MJC1 contains all major biochemical pathways of type II methanotrophs and possesses both particulate and soluble methane monooxygenases, which are not commonly found in other Methylocystis species. These findings open up possibilities for future practical applications such as organism-specific genome-scale models and metabolic engineering strategies.

PLOS ONE (2023)

Article Chemistry, Multidisciplinary

Metal-organic framework-based materials as heterogeneous catalysts for biomass upgrading into renewable plastic precursors

Dieu-Phuong Phan, My Ha Tran, Eun Yeol Lee

Summary: Polymeric materials play a crucial role in modern society, and biomass can be utilized as a renewable carbon source for the production of bio-based plastics. This review summarizes the applications of Metal-Organic Framework (MOF)-based catalysts in the production of renewable bio-plastic-derived materials and highlights the effects of reaction conditions.

MATERIALS TODAY CHEMISTRY (2023)

Article Biotechnology & Applied Microbiology

Methanol-based biomanufacturing of fuels and chemicals using native and synthetic methylotrophs

Arslan Sarwar, Eun Yeol Lee

Summary: Methanol is gaining attention as a potential carbon substrate for the production of fuels and chemicals due to its high reduction degree, abundance, and low price. Both native and synthetic methylotrophic microorganisms have been investigated for the production of biofuels and chemicals. However, the complex metabolic pathways, limited availability of genetic tools, and toxicity issues still pose challenges for achieving high-level production for commercial purposes. This article reviews the production of biofuels and chemicals from methanol by native and synthetic methylotrophs and discusses ways to improve their efficiency.

SYNTHETIC AND SYSTEMS BIOTECHNOLOGY (2023)

Article Biophysics

An integrated centrifugal microfluidic strategy for point-of-care complete blood counting

Reza Khodadadi, Manouchehr Eghbal, Hamideh Ofoghi, Alireza Balaei, Ali Tamayol, Karen Abrinia, Amir Sanati-Nezhad, Mohamadmahdi Samandari

Summary: This paper introduces an integrated portable centrifugal microfluidic system that automates cell and fluid manipulation for complete blood counting (CBC) analysis at the point-of-care (POC). The system utilizes a specially designed microfluidic disc for cell separation, solution metering and mixing, and cell counting, and is equipped with a custom script for automated quantification of cells. The proposed method shows a strong correlation with the gold standard hematology analyzer for various blood parameters. The portable system offers simplicity, affordability, and low power consumption, making it a potential solution for improving healthcare delivery in resource-limited settings and remote areas.

BIOSENSORS & BIOELECTRONICS (2024)

Article Biophysics

Immunity testing against COVID-19 from blood by an IoT-enabled and AI-controlled multiplexed microfluidic platform

Nabil H. Bhuiyan, Joon S. Shim

Summary: Developing herd immunity is crucial for changing the course of the COVID-19 pandemic. An AI-driven point-of-care testing platform has been proposed for analyzing the body's response to SARS-CoV-2, and it has been successfully used for quantifying viral proteins and antibodies in blood samples. A data-receptive web-based dashboard system has also been developed for real-time analysis of herd immunity progress.

BIOSENSORS & BIOELECTRONICS (2024)

Article Biophysics

Influence of shear stress on electroactive biofilm characteristics and performance in microbial fuel cells

Alexiane Godain, Timothy M. Vogel, Pascal Fongarland, Naoufel Haddour

Summary: This study provides comprehensive insights into the intricate relationship between shear stress and electroactive biofilms in microbial fuel cells, highlighting the pivotal role of shear stress in influencing the growth kinetics, electrical performance, and physical structure of the biofilms. The study also emphasizes the complexities of extracellular electron transfer mechanisms and the need for complementary metaproteomic analyses.

BIOSENSORS & BIOELECTRONICS (2024)

Article Biophysics

Cheap and portable paper chip with terrific oxidase-like activity and SERS enhancement performance for SERS-colorimetric bimodal detection of intracellular glutathione

Linjie Wang, Yixin Chen, Yang Ji, Shujun Zheng, Fei Wang, Caolong Li

Summary: A paper-based biosensor incorporating surface-enhanced Raman spectroscopy (SERS) and colorimetric detection has been developed for efficient quantification of intracellular glutathione (GSH). The biosensor exhibits excellent selectivity, stability, and precision, with low detection limits in both SERS and colorimetric modes. It has been successfully utilized for intracellular GSH detection and validated against a commercial GSH assay kit.

BIOSENSORS & BIOELECTRONICS (2024)

Article Biophysics

Tracking the EMT-like phenotype switching during targeted therapy in melanoma by analyzing extracellular vesicle phenotypes

Quan Zhou, Jing Wang, Zhen Zhang, Alain Wuethrich, Richard J. Lobb, Matt Trau

Summary: This study presents a biosensor for sensitive detection of EMT-associated biomarkers on extracellular vesicles (EVs) surfaces during targeted therapy. Through longitudinal monitoring of patients, the biosensor shows its ability to identify the EMT-like phenotype switching on circulating EVs during the development of resistance.

BIOSENSORS & BIOELECTRONICS (2024)

Review Biophysics

Protease detection in the biosensor era: A review

Pratika Rai, Sabrina N. Hoba, Celine Buchmann, Robert J. Subirana-Slotos, Christian Kersten, Tanja Schirmeister, Kristina Endres, Bernd Bufe, Alexey Tarasov

Summary: Proteases have been proposed as potential biomarkers for various pathological conditions. The development of protease biosensors offers a more efficient way to investigate dysregulated proteases. This review article presents different optical and electrochemical detection methods for designing biosensors for all major protease families.

BIOSENSORS & BIOELECTRONICS (2024)

Article Biophysics

Controllable self-assembled DNA nanomachine enable homogeneous rapid electrochemical one-pot assay of lung cancer circulating tumor cells

Chengxin Liu, Xu Shen, Li Yan, Runlian Qu, Yue Wang, Yaqin He, Zixuan Zhan, Piaopiao Chen, Feng Lin

Summary: In this study, a homogeneous rapid electrochemical aptasensor was developed to quantitatively detect CTCs in lung cancer patients. The aptasensor utilized a DNA nanosphere structure and a complementary aptamer to specifically detect mucin 1 as a marker for CTCs. The assay exhibited high specificity and sensitivity, and the results were consistent with other detection methods.

BIOSENSORS & BIOELECTRONICS (2024)

Article Biophysics

Therapeutic drug monitoring mediated by the cooperative chemical and electromagnetic effects of Ti3C2TX modified with Ag nanocubes

Danni Xue, Xing Dai, Jialong Zhao, Jiayao Zhang, Huan Liu, Kui Liu, Tao Xu, Chenjie Gu, Xingfei Zhou, Tao Jiang

Summary: In this study, a dual-enhancement SERS substrate based on Ti3C2TX and Ag nanocubes was fabricated for precise quantification of ritonavir and ibrutinib in serum. The formation of numerous electromagnetic hotspots between Ag nanocubes facilitated effective photo-induced charge transfer. The composite substrate showed excellent sensitivity, achieving low detection limits and high recoveries, making it promising for monitoring and identification of clinical blood drug concentration.

BIOSENSORS & BIOELECTRONICS (2024)

Article Biophysics

CRISPR-Cas12a powered hybrid nanoparticle for extracellular vesicle aggregation and in-situ microRNA detection

Tenghua Zhang, Zihui Xie, Xiaohe Zheng, Yuxin Liang, Yao Lu, Hankang Zhong, Feiyang Qian, Yuqing Zhu, Ruiting Sun, Yan Sheng, Jiaming Hu

Summary: This study reports a technology based on cationic lipid-polymer hybrid nanoparticles for efficient extracellular vesicle (EV) enrichment and in-situ detection of internal microRNAs. The technology demonstrates high EV enrichment efficiency and sensitive internal RNA detection, making it potentially useful for early pancreatic cancer diagnosis.

BIOSENSORS & BIOELECTRONICS (2024)

Article Biophysics

Facile synthesis of dual-ligand europium-metal organic gels for ratiometric electrochemiluminescence detecting I27L gene

Wenjie Dai, Gaoxu Chen, Xiaoyan Wang, Shujun Zhen, Chengzhi Huang, Lei Zhan, Yuanfang Li

Summary: In this study, a novel metal organic gel (MOG) with dual electrochemiluminescence (ECL) properties was prepared by simple mixing. The MOG exhibited strong and stable anodic and cathodic ECL signals. By utilizing this MOG, an ECL resonance energy transfer (ECL-RET) biosensor was constructed for ultrasensitive detection of a specific gene. The study developed a straightforward technique for obtaining a single luminescent material with dual signals and expanded the analytical application of MOGs in the realm of ECL.

BIOSENSORS & BIOELECTRONICS (2024)

Article Biophysics

The use of biological fluids in microfluidic paper-based analytical devices (μPADs): Recent advances, challenges and future perspectives

Lais Canniatti Brazaca, Amanda Hikari Imamura, Rodrigo Vieira Blasques, Jessica Rocha Camargo, Bruno Campos Janegitz, Emanuel Carrilho

Summary: The use of microfluidic paper-based analytical devices (muPADs) for medical diagnosis is a growing trend due to their low cost, easy use, simple manufacturing, and potential for application in low-resource settings. This review focuses on the advances in muPADs for medical diagnostics, discussing their use in detecting various biomarkers in common human biofluids. The challenges of biomarker detection in each sample are examined, along with innovative techniques to overcome these limitations. The commercialization difficulties of muPADs are also considered, along with future trends such as wearable devices and integrated platforms.

BIOSENSORS & BIOELECTRONICS (2024)

Article Biophysics

Development of a peptide microarray-based metal-enhanced fluorescence assay for ultrasensitive detection of multiple matrix metalloproteinase activities by using a gold nanorod-polymer substrate

Minghong Jian, Xudong Sun, Hua Zhang, Xiaotong Li, Shasha Li, Zhenxin Wang

Summary: Matrix metalloproteinases (MMPs) are attractive biomarkers for cancer diagnosis and treatment, but their low abundance in biological samples, especially in the early stages of tumors, makes it challenging to precisely analyze MMP activities. In this study, a peptide microarray-based metal-enhanced fluorescence assay (PMMEFA) is proposed as a sensitive and specific method to simultaneously detect MMP-1, -2, -3, -7, -9, and -13 activities. The PMMEFA showed excellent sensitivity and was capable of detecting MMP activities in various matrices.

BIOSENSORS & BIOELECTRONICS (2024)

Article Biophysics

Plasmonic digital PCR for discriminative detection of SARS-CoV-2 variants

Kyung Ho Kim, Eunsu Ryu, Zinah Hilal Khaleel, Sung Eun Seo, Lina Kim, Yong Ho Kim, Hyun Gyu Park, Oh Seok Kwon

Summary: We have developed a novel strategy for discriminative detection of SARS-CoV-2 variants using the plasmonic photothermal effect of gold nanofilms and digital polymerase chain reaction (dPCR) technology. With this method, we were able to detect the delta and omicron variants with high sensitivity within 25 minutes from COVID-19 patients' clinical samples, making it a rapid and accurate point-of-care testing tool.

BIOSENSORS & BIOELECTRONICS (2024)

Article Biophysics

A wearable and flexible lactic-acid/O2 biofuel cell with an enhanced air-breathing biocathode

Zepeng Kang, Yuanming Wang, Haiyan Song, Xueli Wang, Job Zhang, Zhiguang Zhu

Summary: By designing a wearable and flexible lactic-acid/O2 EBFC with an air-breathing biocathode, the limitations of biocathode are effectively solved. The optimal performance conditions are determined through experiments, and the EBFC is successfully applied to power a low-power device.

BIOSENSORS & BIOELECTRONICS (2024)

Article Biophysics

Gas-responsive two-dimensional metal-organic framework composites for trace visualization of volatile organic compounds

Huayun Chen, Zhiheng You, Yuhui Hong, Xiao Wang, Mingming Zhao, Yushi Luan, Yibin Ying, Yixian Wang

Summary: This study developed a colorimetric sensor array using gas-responsive two-dimensional metal-organic framework (MOF) composites for highly sensitive detection of volatile organic compounds (VOCs). The dye/Zn-2(bim)(4) composites-based sensor arrays showed enhanced sensitivity and anti-interference properties. The findings demonstrate the potential use of dye/Zn-2(bim)(4) sensor arrays for early perception of plant diseases.

BIOSENSORS & BIOELECTRONICS (2024)