Not all Pseudomonas aeruginosa are equal: strains from industrial sources possess uniquely large multireplicon genomes

The complete nucleotide sequence of an IncP-2 megaplasmid unveils a mosaic architecture comprising a putative novel blaVIM-2-harbouring transposon in Pseudomonas aeruginosa

(2017) João Botelho et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Discovery and Biosynthesis of Gladiolin: A Burkholderia gladioli Antibiotic with Promising Activity against Mycobacterium tuberculosis

(2017) Lijiang Song et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets

(2017) Claire Bertelli et al.   NUCLEIC ACIDS RESEARCH

Enabling the democratization of the genomics revolution with a fully integrated web-based bioinformatics platform

(2016) Po-E Li et al.   NUCLEIC ACIDS RESEARCH

PHASTER: a better, faster version of the PHAST phage search tool

(2016) David Arndt et al.   NUCLEIC ACIDS RESEARCH

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Roary: rapid large-scale prokaryote pan genome analysis

(2015) Andrew J. Page et al.   BIOINFORMATICS

Population structure and antimicrobial susceptibility of Pseudomonas aeruginosa from animal infections in France

(2015) Marisa Haenni et al.   BMC Veterinary Research

Complete genome sequence of solvent-tolerant Pseudomonas putida S12 including megaplasmid pTTS12

(2015) J. Kuepper et al.   JOURNAL OF BIOTECHNOLOGY

Phenotypic characterization of an international Pseudomonas aeruginosa reference panel: strains of cystic fibrosis (CF) origin show less in vivo virulence than non-CF strains

(2015) Louise Cullen et al.   MICROBIOLOGY-SGM

Habitat-associated skew of clone abundance in thePseudomonas aeruginosapopulation

(2015) Lutz Wiehlmann et al.   Environmental Microbiology Reports

Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium

(2015) Luca Freschi et al.   Frontiers in Microbiology

What It Takes to Be a Pseudomonas aeruginosa? The Core Genome of the Opportunistic Pathogen Updated

(2015) Benoît Valot et al.   PLoS One

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Evaluation of five selective media for the detection of Pseudomonas aeruginosa using a strain panel from clinical, environmental and industrial sources

(2014) Rebecca Weiser et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Key Role for Efflux in the Preservative Susceptibility and Adaptive Resistance of Burkholderia cepacia Complex Bacteria

(2013) Laura Rushton et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Complete Sequence of pOZ176, a 500-Kilobase IncP-2 Plasmid Encoding IMP-9-Mediated Carbapenem Resistance, from Outbreak Isolate Pseudomonas aeruginosa 96

(2013) Jianhui Xiong et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The Comprehensive Antibiotic Resistance Database

(2013) Andrew G. McArthur et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The BpeEF-OprC Efflux Pump Is Responsible for Widespread Trimethoprim Resistance in Clinical and Environmental Burkholderia pseudomallei Isolates

(2013) Nicole L. Podnecky et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Clinical relevance of the ESKAPE pathogens

(2013) Jack N Pendleton et al.   Expert Review of Anti-Infective Therapy

Draft genomes of 12 host-adapted and environmental isolates ofPseudomonas aeruginosaand their positions in the core genome phylogeny

(2013) Lewis Stewart et al.   Pathogens and Disease

Developing an internationalPseudomonas aeruginosareference panel

(2013) Anthony De Soyza et al.   MicrobiologyOpen

Pseudomonas aeruginosa population structure revisited under environmental focus: impact of water quality and phage pressure

(2012) Katherina Selezska et al.   ENVIRONMENTAL MICROBIOLOGY

Ribosomal multilocus sequence typing: universal characterization of bacteria from domain to strain

(2012) K. A. Jolley et al.   MICROBIOLOGY-SGM

Molecular Epidemiology of Chronic Pseudomonas aeruginosa Airway Infections in Cystic Fibrosis

(2012) Nina Cramer et al.   PLoS One

Culture-Independent Analysis of Bacterial Fuel Contamination Provides Insight into the Level of Concordance with the Standard Industry Practice of Aerobic Cultivation

(2011) Judith White et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phylogeny and compatibility: plasmid classification in the genomics era

(2011) Jörn Petersen   ARCHIVES OF MICROBIOLOGY

BIGSdb: Scalable analysis of bacterial genome variation at the population level

(2011) Keith A Jolley et al.   BMC BIOINFORMATICS

Genetic Characterization Indicates that a Specific Subpopulation of Pseudomonas aeruginosa Is Associated with Keratitis Infections

(2011) R. M. K. Stewart et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Microtiter Dish Biofilm Formation Assay

(2011) George A. O'Toole   Jove-Journal of Visualized Experiments

The Changing Microbial Epidemiology in Cystic Fibrosis

(2010) J. J. LiPuma   CLINICAL MICROBIOLOGY REVIEWS

Complete Genome Sequence of the Multiresistant Taxonomic Outlier Pseudomonas aeruginosa PA7

(2010) Paul H. Roy et al.   PLoS One

The Population Genetics of Pseudomonas aeruginosa Isolates from Different Patient Populations Exhibits High-Level Host Specificity

(2010) Rosa van Mansfeld et al.   PLoS One

Contamination versus preservation of cosmetics: a review on legislation, usage, infections, and contact allergy

(2009) Michael Dyrgaard Lundov et al.   CONTACT DERMATITIS

Biocide susceptibility of the Burkholderia cepacia complex

(2009) H. Rose et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Pseudomonas aeruginosa Population Structure Revisited

(2009) Jean-Paul Pirnay et al.   PLoS One

Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa

(2008) C. Winstanley et al.   GENOME RESEARCH

Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes

(2008) G. L. Winsor et al.   NUCLEIC ACIDS RESEARCH