Influence of the lung microbiome on antibiotic susceptibility of cystic fibrosis pathogens

Airway microenvironment alterations and pathogen growth in cystic fibrosis

(2019) Giovanni A. Rossi et al.   PEDIATRIC PULMONOLOGY

Human and Extracellular DNA Depletion for Metagenomic Analysis of Complex Clinical Infection Samples Yields Optimized Viable Microbiome Profiles

(2019) Maria T. Nelson et al.   Cell Reports

Help, hinder, hide and harm: what can we learn from the interactions between Pseudomonas aeruginosa and Staphylococcus aureus during respiratory infections?

(2019) Dominique Hope Limoli et al.   THORAX

Metabolic Modeling of Cystic Fibrosis Airway Communities Predicts Mechanisms of Pathogen Dominance

(2019) Michael A. Henson et al.   mSystems

Antimicrobial Tolerance and Metabolic Adaptations in Microbial Biofilms

(2019) Aurélie Crabbé et al.   TRENDS IN MICROBIOLOGY

Bacterial social interactions and the emergence of community-intrinsic properties

(2018) Jonas Stenløkke Madsen et al.   CURRENT OPINION IN MICROBIOLOGY

Decreased susceptibility of Streptococcus anginosus to vancomycin in a multispecies biofilm is due to increased thickness of the cell wall

(2018) Sarah Tavernier et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Spatial determinants of quorum signaling in aPseudomonas aeruginosainfection model

(2018) Sophie E. Darch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantitative assessment of individual populations within polymicrobial biofilms

(2018) Susana Patrícia Lopes et al.   Scientific Reports

Influence of three-dimensional lung epithelial cells and interspecies interactions on antibiotic efficacy against Mycobacterium abscessus and Pseudomonas aeruginosa

(2018) Graciela Rodríguez-Sevilla et al.   Pathogens and Disease

Convergent Evolution Driven by Rifampin Exacerbates the Global Burden of Drug-Resistant Staphylococcus aureus

(2018) Romain Guérillot et al.   mSphere

Co-evolution with Staphylococcus aureus leads to lipopolysaccharide alterations in Pseudomonas aeruginosa

(2017) Mikael Tognon et al.   ISME Journal

Dirhamnolipids secreted from Pseudomonas aeruginosa modify anjpegungal susceptibility of Aspergillus fumigatus by inhibiting β1,3 glucan synthase activity

(2017) Benoit Briard et al.   ISME Journal

Cystic Fibrosis Airway Microbiome: Overturning the Old, Opening the Way for the New

(2017) George A. O'Toole   JOURNAL OF BACTERIOLOGY

Diagnostic and prognostic significance of systemic alkyl quinolones for P. aeruginosa in cystic fibrosis: A longitudinal study

(2017) Helen L. Barr et al.   Journal of Cystic Fibrosis

Quantitative microbiome profiling links gut community variation to microbial load

(2017) Doris Vandeputte et al.   NATURE

Developing selective media for quantification of multispecies biofilms following antibiotic treatment

(2017) Eva Vandeplassche et al.   PLoS One

The Role of Reactive Oxygen Species in Antibiotic-Mediated Killing of Bacteria

(2017) Heleen Van Acker et al.   TRENDS IN MICROBIOLOGY

Pseudomonas aeruginosa Alters Staphylococcus aureus Sensitivity to Vancomycin in a Biofilm Model of Cystic Fibrosis Infection

(2017) Giulia Orazi et al.   mBio

Pseudomonas aeruginosa exoproducts determine antibiotic efficacy against Staphylococcus aureus

(2017) Lauren Radlinski et al.   PLOS BIOLOGY

In vivo and In vitro Interactions between Pseudomonas aeruginosa and Staphylococcus spp.

(2017) An Hotterbeekx et al.   Frontiers in Cellular and Infection Microbiology

Discriminating typical and atypical cystic fibrosis-related bacteria by multiplex PNA-FISH

(2016) Susana P. Lopes et al.   BIOTECHNOLOGY AND BIOENGINEERING

Role of CFTR in epithelial physiology

(2016) Vinciane Saint-Criq et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

The Microbiome in Cystic Fibrosis

(2016) Yvonne J. Huang et al.   CLINICS IN CHEST MEDICINE

The role of anaerobic bacteria in the cystic fibrosis airway

(2016) Laura J. Sherrard et al.   CURRENT OPINION IN PULMONARY MEDICINE

Coexistence facilitates interspecific biofilm formation in complex microbial communities

(2016) Jonas S. Madsen et al.   ENVIRONMENTAL MICROBIOLOGY

Production of extended-spectrum β -lactamases and the potential indirect pathogenic role of Prevotella isolates from the cystic fibrosis respiratory microbiota

(2016) Laura J. Sherrard et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Absolute quantification of microbial taxon abundances

(2016) Ruben Props et al.   ISME Journal

Cystic fibrosis

(2016) J Stuart Elborn   LANCET

Respiratory syncytial virus infection enhancesPseudomonas aeruginosabiofilm growth through dysregulation of nutritional immunity

(2016) Matthew R. Hendricks et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Studying Bacterial Multispecies Biofilms: Where to Start?

(2016) Henriette L. Røder et al.   TRENDS IN MICROBIOLOGY

Pseudomonas aeruginosa Evolutionary Adaptation and Diversification in Cystic Fibrosis Chronic Lung Infections

(2016) Craig Winstanley et al.   TRENDS IN MICROBIOLOGY

Commensal Protection of Staphylococcus aureus against Antimicrobials by Candida albicans Biofilm Matrix

(2016) Eric F. Kong et al.   mBio

Cystic fibrosis lung environment and Pseudomonas aeruginosa infection

(2016) Anjali Y. Bhagirath et al.   BMC Pulmonary Medicine

Collective Resistance in Microbial Communities by Intracellular Antibiotic Deactivation

(2016) Robin A. Sorg et al.   PLOS BIOLOGY

Evidence and Role for Bacterial Mucin Degradation in Cystic Fibrosis Airway Disease

(2016) Jeffrey M. Flynn et al.   PLoS Pathogens

Interspecific Bacterial Interactions are Reflected in Multispecies Biofilm Spatial Organization

(2016) Wenzheng Liu et al.   Frontiers in Microbiology

Cyanide Toxicity to Burkholderia cenocepacia Is Modulated by Polymicrobial Communities and Environmental Factors

(2016) Steve P. Bernier et al.   Frontiers in Microbiology

The Role of Short-Chain Fatty Acids, Produced by Anaerobic Bacteria, in the Cystic Fibrosis Airway

(2015) Bojana Mirković et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Chronic pulmonary disease withMycobacterium abscessuscomplex is a biofilm infection

(2015) Tavs Qvist et al.   EUROPEAN RESPIRATORY JOURNAL

Erratum: A Winogradsky-based culture system shows an association between microbial fermentation and cystic fibrosis exacerbation

(2015) Robert A Quinn et al.   ISME Journal

Indirect resistance to several classes of antibiotics in cocultures with resistant bacteria expressing antibiotic-modifying or -degrading enzymes

(2015) Hervé Nicoloff et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Coculture of Staphylococcus aureus with Pseudomonas aeruginosa Drives S. aureus towards Fermentative Metabolism and Reduced Viability in a Cystic Fibrosis Model

(2015) Laura M. Filkins et al.   JOURNAL OF BACTERIOLOGY

Cohort Study of Airway Mycobiome in Adult Cystic Fibrosis Patients: Differences in Community Structure between Fungi and Bacteria Reveal Predominance of Transient Fungal Elements

(2015) Rolf Kramer et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Emerging bacterial pathogens and changing concepts of bacterial pathogenesis in cystic fibrosis

(2015) Michael D. Parkins et al.   Journal of Cystic Fibrosis

Systemic Staphylococcus aureus infection mediated by Candida albicans hyphal invasion of mucosal tissue

(2015) Lisa Marie Schlecht et al.   MICROBIOLOGY-SGM

Pediatric Cystic Fibrosis Sputum Can Be Chemically Dynamic, Anoxic, and Extremely Reduced Due to Hydrogen Sulfide Formation

(2015) Elise S. Cowley et al.   mBio

Quantification ofPseudomonas aeruginosain multispecies biofilms using PMA-qPCR

(2015) Sarah Tavernier et al.   PeerJ

Lung microbiota across age and disease stage in cystic fibrosis

(2015) Bryan Coburn et al.   Scientific Reports

The evolving dynamics of the microbial community in the cystic fibrosis lung

(2014) Luke McGuigan et al.   ENVIRONMENTAL MICROBIOLOGY

Pyocyanin Stimulates Quorum Sensing-Mediated Tolerance to Oxidative Stress and Increases Persister Cell Populations in Acinetobacter baumannii

(2014) Nidhi Bhargava et al.   INFECTION AND IMMUNITY

Synergistic Interactions of Pseudomonas aeruginosa and Staphylococcus aureus in anIn VitroWound Model

(2014) Stephanie DeLeon et al.   INFECTION AND IMMUNITY

Interactions in multispecies biofilms: do they actually matter?

(2014) Mette Burmølle et al.   TRENDS IN MICROBIOLOGY

Pseudomonas aeruginosa eradicates Staphylococcus aureus by manipulating the host immunity

(2014) Erwan Pernet et al.   Nature Communications

Mimicking the host and its microenvironmentin vitrofor studying mucosal infections byPseudomonas aeruginosa

(2014) Aurélie Crabbé et al.   Pathogens and Disease

Characterization and quantification of the fungal microbiome in serial samples from individuals with cystic fibrosis

(2014) Sven D Willger et al.   Microbiome

Mechanistic Model of Rothia mucilaginosa Adaptation toward Persistence in the CF Lung, Based on a Genome Reconstructed from Metagenomic Data

(2013) Yan Wei Lim et al.   PLoS One

3D printing of microscopic bacterial communities

(2013) J. L. Connell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The in vivo biofilm

(2013) Thomas Bjarnsholt et al.   TRENDS IN MICROBIOLOGY

The Cystic Fibrosis Airway Microbiome

(2013) S. V. Lynch et al.   Cold Spring Harbor Perspectives in Medicine

The Extracellular Matrix Component Psl Provides Fast-Acting Antibiotic Defense in Pseudomonas aeruginosa Biofilms

(2013) Nicole Billings et al.   PLoS Pathogens

Results of antibiotic susceptibility testing do not influence clinical outcome in children with cystic fibrosis

(2012) M.N. Hurley et al.   Journal of Cystic Fibrosis

Metagenomics and metatranscriptomics: Windows on CF-associated viral and microbial communities

(2012) Yan Wei Lim et al.   Journal of Cystic Fibrosis

A selective medium for Rothia mucilaginosa and its distribution in oral cavities

(2012) Taira Kobayashi et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Staphylococcus aureus adherence to Candida albicans hyphae is mediated by the hyphal adhesin Als3p

(2012) Brian M. Peters et al.   MICROBIOLOGY-SGM

Decade-long bacterial community dynamics in cystic fibrosis airways

(2012) J. Zhao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacteriophages and diffusion of genes encoding antimicrobial resistance in cystic fibrosis sputum microbiota

(2011) L. Fancello et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Divergent Mechanisms for Passive Pneumococcal Resistance to β-Lactam Antibiotics in the Presence of Haemophilus influenzae

(2011) Kristin E.D. Weimer et al.   JOURNAL OF INFECTIOUS DISEASES

Culture Enriched Molecular Profiling of the Cystic Fibrosis Airway Microbiome

(2011) Christopher D. Sibley et al.   PLoS One

Ability of Candida albicans Mutants To Induce Staphylococcus aureus Vancomycin Resistance during Polymicrobial Biofilm Formation

(2010) M. M. Harriott et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The Changing Microbial Epidemiology in Cystic Fibrosis

(2010) J. J. LiPuma   CLINICAL MICROBIOLOGY REVIEWS

Oxygen levels rapidly modulate Pseudomonas aeruginosa social behaviours via substrate limitation of PqsH

(2010) Jeffrey W. Schertzer et al.   MOLECULAR MICROBIOLOGY

Airway Microbiota and Pathogen Abundance in Age-Stratified Cystic Fibrosis Patients

(2010) Michael J. Cox et al.   PLoS One

Indirect Pathogenicity of Haemophilus influenzae and Moraxella catarrhalis in Polymicrobial Otitis Media Occurs via Interspecies Quorum Signaling

(2010) C. E. Armbruster et al.   mBio

Small-Colony Variant Selection as a Survival Strategy for Staphylococcus aureus in the Presence of Pseudomonas aeruginosa

(2009) L. Biswas et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Proteomic analysis of the adaptive responses of Pseudomonas aeruginosa to aminoglycoside antibiotics

(2009) Helga Mikkelsen et al.   FEMS MICROBIOLOGY LETTERS

Metagenomic Analysis of Respiratory Tract DNA Viral Communities in Cystic Fibrosis and Non-Cystic Fibrosis Individuals

(2009) Dana Willner et al.   PLoS One

Novel Genetic Determinants of Low-Level Aminoglycoside Resistance in Pseudomonas aeruginosa

(2008) K. N. Schurek et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Rhamnolipid–Biosurfactant Permeabilizing Effects on Gram-Positive and Gram-Negative Bacterial Strains

(2008) A. V. Sotirova et al.   CURRENT MICROBIOLOGY