Utility of Circulating Cell-Free RNA Analysis for the Characterization of Global Transcriptome Profiles of Multiple Myeloma Patients

Molecular signatures of multiple myeloma progression through single cell RNA-Seq

(2019) Jin Sung Jang et al.   Blood Cancer Journal

Monitoring tumour burden and therapeutic response through analysis of circulating tumour DNA and extracellular RNA in multiple myeloma patients

(2019) Sridurga Mithraprabhu et al.   LEUKEMIA

Serum level of long noncoding RNA H19 as a diagnostic biomarker of multiple myeloma

(2018) Yafang Pan et al.   CLINICA CHIMICA ACTA

Circulating Tumour DNA Analysis for Tumour Genome Characterisation and Monitoring Disease Burden in Extramedullary Multiple Myeloma

(2018) Sridurga Mithraprabhu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Long intergenic non-coding RNAs have an independent impact on survival in multiple myeloma

(2018) Mehmet Kemal Samur et al.   LEUKEMIA

Extracellular vesicles in cancer — implications for future improvements in cancer care

(2018) Rong Xu et al.   Nature Reviews Clinical Oncology

The expression profile and prognostic significance of eukaryotic translation elongation factors in different cancers

(2018) Md. Khurshidul Hassan et al.   PLoS One

Altered neuro-inflammatory gene expression in hippocampus in major depressive disorder

(2018) Gouri J. Mahajan et al.   PROGRESS IN NEURO-PSYCHOPHARMACOLOGY & BIOLOGICAL PSYCHIATRY

Linc00462 promotes pancreatic cancer invasiveness through the miR-665/TGFBR1-TGFBR2/SMAD2/3 pathway

(2018) Bin Zhou et al.   Cell Death & Disease

A compendium of long non-coding RNAs transcriptional fingerprint in multiple myeloma

(2018) Domenica Ronchetti et al.   Scientific Reports

CTAPIII/CXCL7: a novel biomarker for early diagnosis of lung cancer

(2018) Qiang Du et al.   Cancer Medicine

Circulating exosomal long noncoding RNA PRINS-First findings in monoclonal gammopathies

(2018) Lenka Sedlarikova et al.   HEMATOLOGICAL ONCOLOGY

Long noncoding RNA LINC00978 promotes cell proliferation and invasion in non‑small cell lung cancer by inhibiting miR‑6754‑5p

(2018) Xinlei Li et al.   Molecular Medicine Reports

Association of MUC16 Mutation With Tumor Mutation Load and Outcomes in Patients With Gastric Cancer

(2018) Xiangchun Li et al.   JAMA Oncology

A potential panel of four-long noncoding RNA signature in prostate cancer predicts biochemical recurrence-free survival and disease-free survival

(2017) Tian-bao Huang et al.   INTERNATIONAL UROLOGY AND NEPHROLOGY

Long Noncoding RNA CRNDE Promotes Multiple Myeloma Cell Growth by Suppressing miR-451

(2017) Yi-Bin Meng et al.   ONCOLOGY RESEARCH

New evidence that a large proportion of human blood plasma cell-free DNA is localized in exosomes

(2017) M. Rohan Fernando et al.   PLoS One

Genomic alterations in mucins across cancers

(2017) Ryan J. King et al.   Oncotarget

SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data

(2017) Yuxin Chen et al.   GigaScience

NCOA2is a candidate target gene of 8q gain associated with clinically aggressive prostate cancer

(2016) Maria P. Silva et al.   GENES CHROMOSOMES & CANCER

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

Plasma extracellular RNA profiles in healthy and cancer patients

(2016) Tiezheng Yuan et al.   Scientific Reports

Transcriptome and long noncoding RNA sequencing of three extracellular vesicle subtypes released from the human colon cancer LIM1863 cell line

(2016) Maoshan Chen et al.   Scientific Reports

MALAT1 long non-coding RNA is overexpressed in multiple myeloma and may serve as a marker to predict disease progression

(2014) Shih-Feng Cho et al.   BMC CANCER

Circulating cell-free cancer-testis MAGE-A RNA, BORIS RNA, let-7b and miR-202 in the blood of patients with breast cancer and benign breast diseases

(2014) S A Joosse et al.   BRITISH JOURNAL OF CANCER

Widespread Genetic Heterogeneity in Multiple Myeloma: Implications for Targeted Therapy

(2014) Jens G. Lohr et al.   CANCER CELL

Transcriptome analysis reveals molecular profiles associated with evolving steps of monoclonal gammopathies

(2014) L. Lopez-Corral et al.   HAEMATOLOGICA

Stabilization of Cellular RNA in Blood During Storage at Room Temperature: A Comparison of Cell-Free RNA BCT® with K3EDTA Tubes

(2014) Kausik Das et al.   Molecular Diagnosis & Therapy

Comparative Expression Study of the Endo–G Protein Coupled Receptor (GPCR) Repertoire in Human Glioblastoma Cancer Stem-like Cells, U87-MG Cells and Non Malignant Cells of Neural Origin Unveils New Potential Therapeutic Targets

(2014) Marie Fève et al.   PLoS One

Optimization of Extraction of Circulating RNAs from Plasma – Enabling Small RNA Sequencing

(2014) Melanie Spornraft et al.   PLoS One

Deep Sequencing of RNA from Three Different Extracellular Vesicle (EV) Subtypes Released from the Human LIM1863 Colon Cancer Cell Line Uncovers Distinct Mirna-Enrichment Signatures

(2014) Hong Ji et al.   PLoS One

RNA-Seq and expression microarray highlight different aspects of the fetal amniotic fluid transcriptome

(2014) Lillian M. Zwemer et al.   PRENATAL DIAGNOSIS

Noninvasive in vivo monitoring of tissue-specific global gene expression in humans

(2014) W. Koh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reliable Identification of Genomic Variants from RNA-Seq Data

(2013) Robert Piskol et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Extramedullary myeloma whole genome sequencing reveals novel mutations in Cereblon, proteasome subunit G2 and the glucocorticoid receptor in multi drug resistant disease

(2013) Jan B. Egan et al.   BRITISH JOURNAL OF HAEMATOLOGY

Establishment of tumor-specific copy number alterations from plasma DNA of patients with cancer

(2013) Ellen Heitzer et al.   INTERNATIONAL JOURNAL OF CANCER

Investigation of cell free BIRC5 mRNA as a serum diagnostic and prognostic biomarker for colorectal cancer

(2013) Haiyan Wang et al.   JOURNAL OF SURGICAL ONCOLOGY

Non-invasive analysis of acquired resistance to cancer therapy by sequencing of plasma DNA

(2013) Muhammed Murtaza et al.   NATURE

Downregulation of ubiquitin level via knockdown of polyubiquitin gene Ubb as potential cancer therapeutic intervention

(2013) Choongseob Oh et al.   Scientific Reports

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Whole-genome sequencing of multiple myeloma from diagnosis to plasma cell leukemia reveals genomic initiating events, evolution, and clonal tides

(2012) J. B. Egan et al.   BLOOD

Circulating cell-free human telomerase reverse transcriptase mRNA in plasma and its potential diagnostic and prognostic value for gastric cancer

(2012) Yi Kang et al.   International Journal of Clinical Oncology

Nuclear protein 1 promotes pancreatic cancer development and protects cells from stress by inhibiting apoptosis

(2012) Tewfik Hamidi et al.   JOURNAL OF CLINICAL INVESTIGATION

Cell-Free Circulating Plasma hTERT mRNA Is a Useful Marker for Prostate Cancer Diagnosis and Is Associated with Poor Prognosis Tumor Characteristics

(2012) José A. March-Villalba et al.   PLoS One

Reduced Plasma Level of CXC Chemokine Ligand 7 in Patients with Pancreatic Cancer

(2011) J. Matsubara et al.   CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

Proteomic biomarkers apolipoprotein A1, truncated transthyretin and connective tissue activating protein III enhance the sensitivity of CA125 for detecting early stage epithelial ovarian cancer

(2011) Charlotte H. Clarke et al.   GYNECOLOGIC ONCOLOGY

Detection of circulating Bmi-1 mRNA in plasma and its potential diagnostic and prognostic value for uterine cervical cancer

(2011) Xin Zhang et al.   INTERNATIONAL JOURNAL OF CANCER

Initial genome sequencing and analysis of multiple myeloma

(2011) Michael A. Chapman et al.   NATURE

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

(2010) K. Wang et al.   NUCLEIC ACIDS RESEARCH

MicroRNA-dependent regulation of PTEN after arsenic trioxide treatment in bladder cancer cell line T24

(2010) Yan Cao et al.   TUMOR BIOLOGY

Circulating Nucleic Acids in Plasma and Serum

(2009) Peter B. Gahan et al.   Annals of the New York Academy of Sciences

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Gene Expression Profiling of Bone Marrow Endothelial Cells in Patients with Multiple Myeloma

(2009) R. Ria et al.   CLINICAL CANCER RESEARCH

Connective Tissue-Activating Peptide III: A Novel Blood Biomarker for Early Lung Cancer Detection

(2009) John Yee et al.   JOURNAL OF CLINICAL ONCOLOGY

Identification of TRAK1 (Trafficking protein, kinesin-binding 1) as MGb2-Ag: A novel cancer biomarker

(2008) Faming Zhang et al.   CANCER LETTERS

MicroRNAs regulate critical genes associated with multiple myeloma pathogenesis

(2008) F. Pichiorri et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA