Chromosomal-level assembly of the blood clam, Scapharca (Anadara) broughtonii, using long sequence reads and Hi-C
Published 2019 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Chromosomal-level assembly of the blood clam, Scapharca (Anadara) broughtonii, using long sequence reads and Hi-C
Authors
Keywords
-
Journal
GigaScience
Volume 8, Issue 7, Pages -
Publisher
Oxford University Press (OUP)
Online
2019-07-10
DOI
10.1093/gigascience/giz067
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Chromosomal-level assembly of the blood clam, Scapharca (Anadara) broughtonii, using long sequence reads and Hi-C
- (2019) Chang-Ming Bai et al. GigaScience
- Molecular cloning, expression and biochemical characterization of hemoglobin gene from ark shell Scapharca broughtonii
- (2018) Qing Zhao et al. FISH & SHELLFISH IMMUNOLOGY
- Dual transcriptomic analysis of Ostreid herpesvirus 1 infected Scapharca broughtonii with an emphasis on viral anti-apoptosis activities and host oxidative bursts
- (2018) Chang-Ming Bai et al. FISH & SHELLFISH IMMUNOLOGY
- The Pfam protein families database in 2019
- (2018) Sara El-Gebali et al. NUCLEIC ACIDS RESEARCH
- Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation
- (2017) Sergey Koren et al. GENOME RESEARCH
- Identification and characterization of ostreid herpesvirus 1 associated with massive mortalities of Scapharca broughtonii broodstocks in China
- (2016) C Bai et al. DISEASES OF AQUATIC ORGANISMS
- Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown
- (2016) Mihaela Pertea et al. Nature Protocols
- Using intron position conservation for homology-based gene prediction
- (2016) Jens Keilwagen et al. NUCLEIC ACIDS RESEARCH
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- Identification of protein coding regions in RNA transcripts
- (2015) Shiyuyun Tang et al. NUCLEIC ACIDS RESEARCH
- Age and Growth of the Ark ShellScapharca broughtonii(Bivalvia, Arcidae) in Japanese Waters
- (2014) Daisuke Sugiura et al. JOURNAL OF SHELLFISH RESEARCH
- Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
- (2014) Bruce J. Walker et al. PLoS One
- Infernal 1.1: 100-fold faster RNA homology searches
- (2013) E. P. Nawrocki et al. BIOINFORMATICS
- Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions
- (2013) Joshua N Burton et al. NATURE BIOTECHNOLOGY
- Seasonal changes in the shell microstructure of the bloody clam, Scapharca broughtonii (Mollusca: Bivalvia: Arcidae)
- (2012) Kozue Nishida et al. PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY
- genBlastG: using BLAST searches to build homologous gene models
- (2011) Rong She et al. BIOINFORMATICS
- The UniProt-GO Annotation database in 2011
- (2011) E. C. Dimmer et al. NUCLEIC ACIDS RESEARCH
- CDD: a Conserved Domain Database for the functional annotation of proteins
- (2010) A. Marchler-Bauer et al. NUCLEIC ACIDS RESEARCH
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Identification and characterization of pseudogenes in the rice gene complement
- (2009) Françoise Thibaud-Nissen et al. BMC GENOMICS
- Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
- (2008) Brian J Haas et al. GENOME BIOLOGY
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now