The Bacterial and Fungal Microbiota of Nelore Steers Is Dynamic Across the Gastrointestinal Tract and Its Fecal-Associated Microbiota Is Correlated to Feed Efficiency

Application of Transcriptomics to Compare the Carbohydrate Active Enzymes That Are Expressed by Diverse Genera of Anaerobic Fungi to Degrade Plant Cell Wall Carbohydrates

(2018) Robert J. Gruninger et al.   Frontiers in Microbiology

16S rRNA gene sequencing reveals altered composition of gut microbiota in individuals with kidney stones

(2018) Ruiqiang Tang et al.   Urolithiasis

Effects of rotating antibiotic and ionophore feed additives on volatile fatty acid production, potential for methane production, and microbial populations of steers consuming a moderate-forage diet

(2017) W. L. Crossland et al.   JOURNAL OF ANIMAL SCIENCE

Residual feed intake, carcass traits and meat quality in Nellore cattle

(2017) H.A. Fidelis et al.   MEAT SCIENCE

Strains, functions and dynamics in the expanded Human Microbiome Project

(2017) Jason Lloyd-Price et al.   NATURE

The gastrointestinal microbiome and its association with the control of pathogens in broiler chicken production: A review

(2017) Viviana Clavijo et al.   POULTRY SCIENCE

Heritable Bovine Rumen Bacteria Are Phylogenetically Related and Correlated with the Cow’s Capacity To Harvest Energy from Its Feed

(2017) Goor Sasson et al.   mBio

Effect of Pre-weaning Diet on the Ruminal Archaeal, Bacterial, and Fungal Communities of Dairy Calves

(2017) Juliana Dias et al.   Frontiers in Microbiology

A parts list for fungal cellulosomes revealed by comparative genomics

(2017) Charles H. Haitjema et al.   Nature Microbiology

Differential gene expression in the duodenum, jejunum and ileum among crossbred beef steers with divergent gain and feed intake phenotypes

(2016) A. K. Lindholm-Perry et al.   ANIMAL GENETICS

Specific microbiome-dependent mechanisms underlie the energy harvest efficiency of ruminants

(2016) Sheerli Kruger Ben Shabat et al.   ISME Journal

Microbial community profiles of the jejunum from steers differing in feed efficiency1,2,3

(2016) P. R. Myer et al.   JOURNAL OF ANIMAL SCIENCE

Functional Redundancy-Induced Stability of Gut Microbiota Subjected to Disturbance

(2016) Andrés Moya et al.   TRENDS IN MICROBIOLOGY

RUMINANT NUTRITION SYMPOSIUM: How to use data on the rumen microbiome to improve our understanding of ruminant nutrition1,2

(2015) J. L. Firkins et al.   JOURNAL OF ANIMAL SCIENCE

Gastrointestinal Tract Colonization Dynamics by DifferentEnterococcus faeciumClades

(2015) Maria Camila Montealegre et al.   JOURNAL OF INFECTIOUS DISEASES

Characterising the bacterial microbiota across the gastrointestinal tracts of dairy cattle: membership and potential function

(2015) Shengyong Mao et al.   Scientific Reports

Rumen Microbiome from Steers Differing in Feed Efficiency

(2015) Phillip R. Myer et al.   PLoS One

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Relationship between the Rumen Microbiome and Residual Feed Intake-Efficiency of Brahman Bulls Stocked on Bermudagrass Pastures

(2014) Joshua C. McCann et al.   PLoS One

Metabolic Flexibility as a Major Predictor of Spatial Distribution in Microbial Communities

(2014) Franck Carbonero et al.   PLoS One

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Simultaneous Amplicon Sequencing to Explore Co-Occurrence Patterns of Bacterial, Archaeal and Eukaryotic Microorganisms in Rumen Microbial Communities

(2013) Sandra Kittelmann et al.   PLoS One

Effect of DNA Extraction Methods and Sampling Techniques on the Apparent Structure of Cow and Sheep Rumen Microbial Communities

(2013) Gemma Henderson et al.   PLoS One

Characterizing the microbiota across the gastrointestinal tract of a Brazilian Nelore steer

(2013) Marcelo Nagem Valério de Oliveira et al.   VETERINARY MICROBIOLOGY

The human microbiome: at the interface of health and disease

(2012) Ilseung Cho et al.   NATURE REVIEWS GENETICS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Composition and Similarity of Bovine Rumen Microbiota across Individual Animals

(2012) Elie Jami et al.   PLoS One

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Characterization of the rumen microbiota of pre-ruminant calves using metagenomic tools

(2011) Robert W. Li et al.   ENVIRONMENTAL MICROBIOLOGY

From the gut to the peripheral tissues: the multiple effects of butyrate

(2010) P. Guilloteau et al.   NUTRITION RESEARCH REVIEWS

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative studies of microbial populations in the rumen, duodenum, ileum and faeces of lactating dairy cows

(2009) J.C. Frey et al.   JOURNAL OF APPLIED MICROBIOLOGY

The core gut microbiome, energy balance and obesity

(2009) Peter J. Turnbaugh et al.   JOURNAL OF PHYSIOLOGY-LONDON