Protein interactions and consensus clustering analysis uncover insights into herpesvirus virion structure and function relationships

Alzheimer’s Disease-Associated β-Amyloid Is Rapidly Seeded by Herpesviridae to Protect against Brain Infection

(2018) William A. Eimer et al.   NEURON

Structure of the herpes simplex virus 1 capsid with associated tegument protein complexes

(2018) Xinghong Dai et al.   SCIENCE

Structure of the herpes simplex virus portal-vertex

(2018) Marion McElwee et al.   PLOS BIOLOGY

The Gene Ontology Resource: 20 years and still GOing strong

(2018)   NUCLEIC ACIDS RESEARCH

The Interaction between Herpes Simplex Virus 1 Tegument Proteins UL51 and UL14 and Its Role in Virion Morphogenesis

(2016) Shinya Oda et al.   JOURNAL OF VIROLOGY

Dual Function of the pUL7-pUL51 Tegument Protein Complex in Herpes Simplex Virus 1 Infection

(2016) Anna Albecka et al.   JOURNAL OF VIROLOGY

HVint: A Strategy for Identifying Novel Protein-Protein Interactions in Herpes Simplex Virus Type 1

(2016) Paul Ashford et al.   MOLECULAR & CELLULAR PROTEOMICS

UniProt: the universal protein knowledgebase

(2016)   NUCLEIC ACIDS RESEARCH

Common Evolutionary Origin of Procapsid Proteases, Phage Tail Tubes, and Tubes of Bacterial Type VI Secretion Systems

(2016) Andrei Fokine et al.   STRUCTURE

JPred4: a protein secondary structure prediction server

(2015) Alexey Drozdetskiy et al.   NUCLEIC ACIDS RESEARCH

HSV-1 gM and the gK/pUL20 Complex Are Important for the Localization of gD and gH/L to Viral Assembly Sites

(2015) Sheung-Yee Lau et al.   Viruses-Basel

Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study

(2015) J. M. Villaveces et al.   Database-The Journal of Biological Databases and Curation

The Collagen-like Protein gp12 Is a Temperature-dependent Reversible Binder of SPP1 Viral Capsids

(2014) Mohamed Zairi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Bacterial collagen-like proteins that form triple-helical structures

(2014) Zhuoxin Yu et al.   JOURNAL OF STRUCTURAL BIOLOGY

The Herpes Simplex Virus 1 UL51 Gene Product Has Cell Type-Specific Functions in Cell-to-Cell Spread

(2014) R. J. Roller et al.   JOURNAL OF VIROLOGY

Herpes Simplex Virus 1 gN Partners with gM To Modulate the Viral Fusion Machinery

(2014) Imane El Kasmi et al.   JOURNAL OF VIROLOGY

VirHostNet 2.0: surfing on the web of virus/host molecular interactions data

(2014) Thibaut Guirimand et al.   NUCLEIC ACIDS RESEARCH

Structural similarities in DNA packaging and delivery apparatuses in Herpesvirus and dsDNA bacteriophages

(2014) Frazer J Rixon et al.   Current Opinion in Virology

Polyproline and Triple Helix Motifs in Host-Pathogen Recognition

(2013) Rita Berisio et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

A Proteomic Perspective of Inbuilt Viral Protein Regulation: pUL46 Tegument Protein is Targeted for Degradation by ICP0 during Herpes Simplex Virus Type 1 Infection

(2013) Aaron E. Lin et al.   MOLECULAR & CELLULAR PROTEOMICS

mentha: a resource for browsing integrated protein-interaction networks

(2013) Alberto Calderone et al.   NATURE METHODS

The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases

(2013) Sandra Orchard et al.   NUCLEIC ACIDS RESEARCH

Binding Efficiency of Protein–Protein Complexes

(2012) Eric S. Day et al.   BIOCHEMISTRY

MetaDisorder: a meta-server for the prediction of intrinsic disorder in proteins

(2012) Lukasz P Kozlowski et al.   BMC BIOINFORMATICS

Cytosolic herpes simplex virus capsids not only require binding inner tegument protein pUL36 but also pUL37 for active transport prior to secondary envelopment

(2012) Malte Sandbaumhüter et al.   CELLULAR MICROBIOLOGY

Characterization of herpes simplex virus type 1 L-particle assembly and egress in hippocampal neurones by electron cryo-tomography

(2012) Iosune Ibiricu et al.   CELLULAR MICROBIOLOGY

Capsid Structure and Its Stability at the Late Stages of Bacteriophage SPP1 Assembly

(2012) H. E. White et al.   JOURNAL OF VIROLOGY

Regulated Interaction of Tegument Proteins UL16 and UL11 from Herpes Simplex Virus

(2012) P. Chadha et al.   JOURNAL OF VIROLOGY

Herpes Simplex Virus Membrane Proteins gE/gI and US9 Act Cooperatively To Promote Transport of Capsids and Glycoproteins from Neuron Cell Bodies into Initial Axon Segments

(2012) P. W. Howard et al.   JOURNAL OF VIROLOGY

Single-cell analysis of population context advances RNAi screening at multiple levels

(2012) Berend Snijder et al.   Molecular Systems Biology

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Function of glycoprotein E of herpes simplex virus requires coordinated assembly of three tegument proteins on its cytoplasmic tail

(2012) J. Han et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment

(2011) Michael Remmert et al.   NATURE METHODS

Herpes simplex virus type 1 UL14 tegument protein regulates intracellular compartmentalization of major tegument protein VP16

(2011) Akane Ohta et al.   Virology Journal

Quantitative analysis of cryo-EM density map segmentation by watershed and scale-space filtering, and fitting of structures by alignment to regions

(2010) Grigore D. Pintilie et al.   JOURNAL OF STRUCTURAL BIOLOGY

Crystal structure of the conserved herpesvirus fusion regulator complex gH–gL

(2010) Tirumala K Chowdary et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

EMDataBank.org: unified data resource for CryoEM

(2010) C. L. Lawson et al.   NUCLEIC ACIDS RESEARCH

Role of the UL45 protein in herpes simplex virus entry via low pH-dependent endocytosis and its relationship to the conformation and function of glycoprotein B

(2010) Stephen J. Dollery et al.   VIRUS RESEARCH

Transmembrane protein topology prediction using support vector machines

(2009) Timothy Nugent et al.   BMC BIOINFORMATICS

Interaction Domains of the UL16 and UL21 Tegument Proteins of Herpes Simplex Virus

(2009) A. L. Harper et al.   JOURNAL OF VIROLOGY

A Targeted Spatial-Temporal Proteomics Approach Implicates Multiple Cellular Trafficking Pathways in Human Cytomegalovirus Virion Maturation

(2009) Nathaniel J. Moorman et al.   MOLECULAR & CELLULAR PROTEOMICS

Universal sample preparation method for proteome analysis

(2009) Jacek R Wiśniewski et al.   NATURE METHODS

Herpes simplex virus type 2 tegument protein UL56 relocalizes ubiquitin ligase Nedd4 and has a role in transport and/or release of virions

(2009) Yoko Ushijima et al.   Virology Journal

Evolutionarily Conserved Herpesviral Protein Interaction Networks

(2009) Even Fossum et al.   PLoS Pathogens

Fast unfolding of communities in large networks

(2008) Vincent D Blondel et al.   JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT

Localization of Herpes Simplex Virus Type 1 UL37 in the Golgi Complex Requires UL36 but Not Capsid Structures

(2008) P. Desai et al.   JOURNAL OF VIROLOGY

Analysis of the Interaction between the UL11 and UL16 Tegument Proteins of Herpes Simplex Virus

(2008) P.-C. Yeh et al.   JOURNAL OF VIROLOGY

Comprehensive Characterization of Extracellular Herpes Simplex Virus Type 1 Virions

(2008) S. Loret et al.   JOURNAL OF VIROLOGY

Maps of random walks on complex networks reveal community structure

(2008) M. Rosvall et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of structural protein–protein interactions of herpes simplex virus type 1

(2008) Jin H. Lee et al.   VIROLOGY