Dissecting the transcriptome landscape of the human fetal neural retina and retinal pigment epithelium by single-cell RNA-seq analysis

Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina

(2019) Yi-Rong Peng et al.   CELL

Single-cell reconstruction of the early maternal–fetal interface in humans

(2018) Roser Vento-Tormo et al.   NATURE

Analysis of expression of transcription factors in early human retina

(2017) Jing Chen et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL NEUROSCIENCE

SCENIC: single-cell regulatory network inference and clustering

(2017) Sara Aibar et al.   NATURE METHODS

The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis

(2017) Issam Aldiri et al.   NEURON

Development of Retinal Layers in Prenatal Human Retina

(2016) Anita Hendrickson   AMERICAN JOURNAL OF OPHTHALMOLOGY

Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics

(2016) Karthik Shekhar et al.   CELL

Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq

(2016) I. Tirosh et al.   SCIENCE

Retinal Organoids from Pluripotent Stem Cells Efficiently Recapitulate Retinogenesis

(2016) Manuela Völkner et al.   Stem Cell Reports

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

(2015) Evan Z. Macosko et al.   CELL

Generation of retinal ganglion cells with functional axons from human induced pluripotent stem cells

(2015) Taku Tanaka et al.   Scientific Reports

Transcriptomic analysis across nasal, temporal, and macular regions of human neural retina and RPE/choroid by RNA-Seq

(2014) S. Scott Whitmore et al.   EXPERIMENTAL EYE RESEARCH

Genotype–phenotype correlation and mutation spectrum in a large cohort of patients with inherited retinal dystrophy revealed by next-generation sequencing

(2014) Xiu-Feng Huang et al.   GENETICS IN MEDICINE

Comprehensive analysis of gene expression in human retina and supporting tissues

(2014) Mingyao Li et al.   HUMAN MOLECULAR GENETICS

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

(2014) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Full-length RNA-seq from single cells using Smart-seq2

(2014) Simone Picelli et al.   Nature Protocols

Transcriptome analyses of the human retina identify unprecedented transcript diversity and 3.5 Mb of novel transcribed sequence via significant alternative splicing and novel genes

(2013) Michael H Farkas et al.   BMC GENOMICS

Targeting midkine and pleiotrophin signalling pathways in addiction and neurodegenerative disorders: recent progress and perspectives

(2013) G Herradón et al.   BRITISH JOURNAL OF PHARMACOLOGY

Next-Generation Regenerative Medicine: Organogenesis from Stem Cells in 3D Culture

(2013) Yoshiki Sasai   Cell Stem Cell

Precocious Acquisition of Neuroepithelial Character in the Eye Field Underlies the Onset of Eye Morphogenesis

(2013) Kenzo Ivanovitch et al.   DEVELOPMENTAL CELL

Retinal pigment epithelium development, plasticity, and tissue homeostasis

(2013) Sabine Fuhrmann et al.   EXPERIMENTAL EYE RESEARCH

Intrinsic control of mammalian retinogenesis

(2012) Mengqing Xiang   CELLULAR AND MOLECULAR LIFE SCIENCES

Transcriptional code and disease map for adult retinal cell types

(2012) Sandra Siegert et al.   NATURE NEUROSCIENCE

Gene networks: Dissecting pathways in retinal development and disease

(2012) Cheryl Y. Gregory-Evans et al.   PROGRESS IN RETINAL AND EYE RESEARCH

Eye Development and Retinogenesis

(2012) W. Heavner et al.   Cold Spring Harbor Perspectives in Biology

Combinatorial regulation of optic cup progenitor cell fate by SOX2 and PAX6

(2011) D. Matsushima et al.   DEVELOPMENT

Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq

(2011) S. Islam et al.   GENOME RESEARCH

Onecut 1 and Onecut 2 are potential regulators of mouse retinal development

(2011) Fuguo Wu et al.   JOURNAL OF COMPARATIVE NEUROLOGY

RNAscope

(2011) Fay Wang et al.   JOURNAL OF MOLECULAR DIAGNOSTICS

An Essential Role for RAX Homeoprotein and NOTCH-HES Signaling in Otx2 Expression in Embryonic Retinal Photoreceptor Cell Fate Determination

(2011) Y. Muranishi et al.   JOURNAL OF NEUROSCIENCE

Age related macular degeneration and drusen: Neuroinflammation in the retina

(2011) Elisa Buschini et al.   PROGRESS IN NEUROBIOLOGY

From Progenitors to Differentiated Cells in the Vertebrate Retina

(2009) Michalis Agathocleous et al.   Annual Review of Cell and Developmental Biology

Birthdays of retinal amacrine cell subtypes are systematically related to their molecular identity and soma position

(2009) P. Emanuela Voinescu et al.   JOURNAL OF COMPARATIVE NEUROLOGY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

ISL1 and BRN3B co-regulate the differentiation of murine retinal ganglion cells

(2008) L. Pan et al.   DEVELOPMENT

Gene-regulation logic in retinal ganglion cell development: Isl1 defines a critical branch distinct from but overlapping with Pou4f2

(2008) X. Mu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA