Transcriptome Analysis of Long-lived Drosophila melanogaster E(z) Mutants Sheds Light on the Molecular Mechanisms of Longevity

Gene expression hallmarks of cellular ageing

(2018) Stephen Frenk et al.   BIOGERONTOLOGY

Transcriptome analysis reveals mechanisms of geroprotective effects of fucoxanthin in Drosophila

(2018) Alexey Moskalev et al.   BMC GENOMICS

Identification of target genes regulated by the Drosophila histone methyltransferase Eggless reveals a role of Decapentaplegic in apoptotic signaling

(2018) Igojo Kang et al.   Scientific Reports

High throughput in vivo functional validation of candidate congenital heart disease genes in Drosophila

(2017) Jun-yi Zhu et al.   eLife

Transgenerational programming of longevity and reproduction by post-eclosion dietary manipulation in Drosophila

(2016) Brian Xia et al.   Aging-US

The influence of pro-longevity gene Gclc overexpression on the age-dependent changes in Drosophila transcriptome and biological functions

(2016) Alexey Moskalev et al.   BMC GENOMICS

Epigenetic Mechanisms of Longevity and Aging

(2016) Payel Sen et al.   CELL

OASIS 2: online application for survival analysis 2 with features for the analysis of maximal lifespan and healthspan in aging research

(2016) Seong Kyu Han et al.   Oncotarget

Epigenetics and aging

(2016) S. Pal et al.   Science Advances

Gene expression changes in response to aging compared to heat stress, oxidative stress and ionizing radiation in Drosophila melanogaster

(2016) Gary Landis et al.   Aging-US

A comparison of the transcriptome of Drosophila melanogaster in response to entomopathogenic fungus, ionizing radiation, starvation and cold shock

(2015) Alexey Moskalev et al.   BMC GENOMICS

Aging-Dependent Demethylation of Regulatory Elements Correlates with Chromatin State and Improved β Cell Function

(2015) Dana Avrahami et al.   Cell Metabolism

Homeodomain proteins: an update

(2015) Thomas R. Bürglin et al.   CHROMOSOMA

PPLine: An Automated Pipeline for SNP, SAP, and Splice Variant Detection in the Context of Proteogenomics

(2015) George Sergeevich Krasnov et al.   JOURNAL OF PROTEOME RESEARCH

Gel-free mass spectrometry analysis ofDrosophila melanogasterheads

(2015) Jana Aradska et al.   PROTEOMICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Epigenomic Profiling of Young and Aged HSCs Reveals Concerted Changes during Aging that Reinforce Self-Renewal

(2014) Deqiang Sun et al.   Cell Stem Cell

Epigenetic Control of Learning and Memory in Drosophila by Tip60 HAT Action

(2014) Songjun Xu et al.   GENETICS

Sequencing Degraded RNA Addressed by 3' Tag Counting

(2014) Benjamín Sigurgeirsson et al.   PLoS One

Cloning and Characterization of a Novel Drosophila Stress Induced DNase

(2014) Chang-Soo Seong et al.   PLoS One

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Pathview: an R/Bioconductor package for pathway-based data integration and visualization

(2013) Weijun Luo et al.   BIOINFORMATICS

Advanced glycoxidation and lipoxidation end products (AGEs and ALEs): an overview of their mechanisms of formation

(2013) G. Vistoli et al.   FREE RADICAL RESEARCH

RSeQC: quality control of RNA-seq experiments

(2012) Liguo Wang et al.   BIOINFORMATICS

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Polycomb Associates Genome-wide with a Specific RNA Polymerase II Variant, and Regulates Metabolic Genes in ESCs

(2012) Emily Brookes et al.   Cell Stem Cell

Extradenticle and Homothorax Control Adult Muscle Fiber Identity in Drosophila

(2012) Anton L. Bryantsev et al.   DEVELOPMENTAL CELL

Drosophila melanogaster p24 trafficking proteins have vital roles in development and reproduction

(2012) Sehresh Saleem et al.   MECHANISMS OF DEVELOPMENT

FlyAtlas: database of gene expression in the tissues of Drosophila melanogaster

(2012) S. W. Robinson et al.   NUCLEIC ACIDS RESEARCH

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Heterochromatin Formation Promotes Longevity and Represses Ribosomal RNA Synthesis

(2012) Kimberly Larson et al.   PLoS Genetics

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

(2011) P. Gaudet et al.   BRIEFINGS IN BIOINFORMATICS

Flies selected for longevity retain a young gene expression profile

(2010) Pernille Sarup et al.   AGE

Increase of Drosophila melanogaster lifespan due to D-GADD45 overexpression in the nervous system

(2010) E. N. Plyusnina et al.   BIOGERONTOLOGY

Activation of the Acute Inflammatory Response Alters Cytochrome P450 Expression and Eicosanoid Metabolism

(2010) K. N. Theken et al.   DRUG METABOLISM AND DISPOSITION

Experimental Selection for Drosophila Survival in Extremely High O2 Environments

(2010) Huiwen W. Zhao et al.   PLoS One

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Variant Ionotropic Glutamate Receptors as Chemosensory Receptors in Drosophila

(2009) Richard Benton et al.   CELL

Impact of Infectious and Inflammatory Disease on Cytochrome P450–Mediated Drug Metabolism and Pharmacokinetics

(2009) ET Morgan   CLINICAL PHARMACOLOGY & THERAPEUTICS

dbx mediates neuronal specification and differentiation through cross-repressive, lineage-specific interactions with eve and hb9

(2009) H. Lacin et al.   DEVELOPMENT

Hyperoxia-induced neurodegeneration as a tool to identify neuroprotective genes in Drosophila melanogaster

(2009) Christoph Gruenewald et al.   FREE RADICAL BIOLOGY AND MEDICINE

Polycomb Repressive Complex 2 and Trithorax modulate Drosophila longevity and stress resistance

(2009) A. P. Siebold et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Opposing Effects of Dietary Protein and Sugar Regulate a Transcriptional Target of Drosophila Insulin-like Peptide Signaling

(2008) Susanne Buch et al.   Cell Metabolism