Molecular Characterization and Comparative Genomics of Clinical Hybrid Shiga Toxin-Producing and Enterotoxigenic Escherichia coli (STEC/ETEC) Strains in Sweden

Genome-by-genome approach for fast bacterial genealogical relationship evaluation

(2018) Ji Zhang et al.   BIOINFORMATICS

Identification and pathogenomic analysis of an Escherichia coli strain producing a novel Shiga toxin 2 subtype

(2018) Xiangning Bai et al.   Scientific Reports

Shiga Toxin-Producing Escherichia coli Infection in Jönköping County, Sweden: Occurrence and Molecular Characteristics in Correlation With Clinical Symptoms and Duration of stx Shedding

(2018) Xiangning Bai et al.   Frontiers in Cellular and Infection Microbiology

Genetic makeup of Shiga toxin-producing Escherichia coli in relation to clinical symptoms and duration of shedding: a microarray analysis of isolates from Swedish children

(2017) A. Matussek et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Epidemiology of transmissible diseases: Array hybridization and next generation sequencing as universal nucleic acid-mediated typing tools

(2017) W. Michael Dunne et al.   INFECTION GENETICS AND EVOLUTION

First Isolation of a Hybrid Shigatoxigenic and Enterotoxigenic Escherichia coli Strain Harboring the stx2 and elt Genes in Korea

(2017) Kyung-Hwan Oh et al.   JAPANESE JOURNAL OF INFECTIOUS DISEASES

Comparative genomics and transcriptomics of Escherichia coli isolates carrying virulence factors of both enteropathogenic and enterotoxigenic E. coli

(2017) Tracy H. Hazen et al.   Scientific Reports

Hybrid Shiga Toxin-Producing and Enterotoxigenic Escherichia sp. Cryptic Lineage 1 Strain 7v Harbors a Hybrid Plasmid

(2016) Susan R. Leonard et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

plasmidSPAdes: assembling plasmids from whole genome sequencing data

(2016) Dmitry Antipov et al.   BIOINFORMATICS

Hybrids of Shigatoxigenic and EnterotoxigenicEscherichia coli(STEC/ETEC) Among Human and Animal Isolates in Finland

(2015) O. Nyholm et al.   Zoonoses and Public Health

Shiga Toxin-ProducingEscherichia coliin Diarrheal Stool of Swedish Children: Evaluation of Polymerase Chain Reaction Screening and Duration of Shiga Toxin Shedding

(2015) Andreas Matussek et al.   Journal of the Pediatric Infectious Diseases Society

Comparative Genomics and Characterization of Hybrid Shigatoxigenic and Enterotoxigenic Escherichia coli (STEC/ETEC) Strains

(2015) Outi Nyholm et al.   PLoS One

In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

(2014) Alessandra Carattoli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Heteropathogenic virulence and phylogeny reveal phased pathogenic metamorphosis inEscherichia coliO2:H6

(2014) Martina Bielaszewska et al.   EMBO Molecular Medicine

Hemolytic Uremic Syndrome in a 65-Year-Old Male Linked to a Very Unusual Type of stx2e- and eae-Harboring O51:H49 Shiga Toxin-Producing Escherichia coli

(2014) D. Fasel et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Identification of enterotoxigenic Escherichia coli (ETEC) clades with long-term global distribution

(2014) Astrid von Mentzer et al.   NATURE GENETICS

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

(2014) Nicholas J. Croucher et al.   NUCLEIC ACIDS RESEARCH

Shiga toxin-converting phages and the emergence of new pathogenic Escherichia coli: a world in motion

(2014) Rosangela Tozzoli et al.   Frontiers in Cellular and Infection Microbiology

Characterization of Escherichia coli Isolates from Hospital Inpatients or Outpatients with Urinary Tract Infection

(2013) F. Toval et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Burden and aetiology of diarrhoeal disease in infants and young children in developing countries (the Global Enteric Multicenter Study, GEMS): a prospective, case-control study

(2013) Karen L Kotloff et al.   LANCET

Multicenter Evaluation of a Sequence-Based Protocol for Subtyping Shiga Toxins and Standardizing Stx Nomenclature

(2012) F. Scheutz et al.   JOURNAL OF CLINICAL MICROBIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Ribosomal multilocus sequence typing: universal characterization of bacteria from domain to strain

(2012) K. A. Jolley et al.   MICROBIOLOGY-SGM

Comparative Genomics and stx Phage Characterization of LEE-Negative Shiga Toxin-Producing Escherichia coli

(2012) Susan R. Steyert et al.   Frontiers in Cellular and Infection Microbiology

Shiga Toxin Subtypes Display Dramatic Differences in Potency

(2011) Cynthia A. Fuller et al.   INFECTION AND IMMUNITY

Characterization of Escherichia coli Strains Isolated from Patients with Diarrhea in São Paulo, Brazil: Identification of Intermediate Virulence Factor Profiles by Multiplex PCR

(2011) Ariane Liebchen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Distribution of Classical and Nonclassical Virulence Genes in Enterotoxigenic Escherichia coli Isolates from Chilean Children and tRNA Gene Screening for Putative Insertion Sites for Genomic Islands

(2011) Felipe Del Canto et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Origins of theE. coliStrain Causing an Outbreak of Hemolytic–Uremic Syndrome in Germany

(2011) David A. Rasko et al.   NEW ENGLAND JOURNAL OF MEDICINE

PHAST: A Fast Phage Search Tool

(2011) Y. Zhou et al.   NUCLEIC ACIDS RESEARCH

Shiga Toxin-Producing Escherichia coli O100:H–: stx 2e in Drinking Water Contaminated by Waste Water in Finland

(2010) Taru Lienemann et al.   CURRENT MICROBIOLOGY

Comparative analysis of virulence genes, genetic diversity, and phylogeny of Shiga toxin 2g and heat-stable enterotoxin STIa encoding Escherichia coli isolates from humans, animals, and environmental sources

(2010) Rita Prager et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Assessment of Shiga Toxin-Producing Escherichia coli Isolates from Wildlife Meat as Potential Pathogens for Humans

(2009) A. Miko et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Horizontal Gene Transfer of the Secretome Drives the Evolution of Bacterial Cooperation and Virulence

(2009) Teresa Nogueira et al.   CURRENT BIOLOGY

Host and pathogen determinants of verocytotoxin-producing Escherichia coli -associated hemolytic uremic syndrome

(2009) Mohamed A Karmali   KIDNEY INTERNATIONAL

Evaluation of Major Types of Shiga Toxin 2e-Producing Escherichia coli Bacteria Present in Food, Pigs, and the Environment as Potential Pathogens for Humans

(2008) L. Beutin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Pangenome Structure of Escherichia coli: Comparative Genomic Analysis of E. coli Commensal and Pathogenic Isolates

(2008) D. A. Rasko et al.   JOURNAL OF BACTERIOLOGY