Pancreatic islet chromatin accessibility and conformation reveals distal enhancer networks of type 2 diabetes risk
Published 2019 View Full Article
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Title
Pancreatic islet chromatin accessibility and conformation reveals distal enhancer networks of type 2 diabetes risk
Authors
Keywords
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Journal
Nature Communications
Volume 10, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2019-05-08
DOI
10.1038/s41467-019-09975-4
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Note: Only part of the references are listed.- Subtle changes in chromatin loop contact propensity are associated with differential gene regulation and expression
- (2019) William W. Greenwald et al. Nature Communications
- Histone H3 lysine 4 monomethylation modulates long-range chromatin interactions at enhancers
- (2018) Jian Yan et al. CELL RESEARCH
- Integration of human pancreatic islet genomic data refines regulatory mechanisms at Type 2 Diabetes susceptibility loci
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- (2018) Shubham Khetan et al. DIABETES
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- (2017) François Aguet et al. NATURE
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- (2017) Arushi Varshney et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2016) Christian Fuchsberger et al. NATURE
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- (2016) Amanda M. Ackermann et al. Molecular Metabolism
- Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom
- (2016) Neva C. Durand et al. Cell Systems
- Genetic fine mapping and genomic annotation defines causal mechanisms at type 2 diabetes susceptibility loci
- (2015) Kyle J Gaulton et al. NATURE GENETICS
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- (2015) Hilary K Finucane et al. NATURE GENETICS
- WASP: allele-specific software for robust molecular quantitative trait locus discovery
- (2015) Bryce van de Geijn et al. NATURE METHODS
- The MEME Suite
- (2015) Timothy L. Bailey et al. NUCLEIC ACIDS RESEARCH
- Transcript Expression Data from Human Islets Links Regulatory Signals from Genome-Wide Association Studies for Type 2 Diabetes and Glycemic Traits to Their Downstream Effectors
- (2015) Martijn van de Bunt et al. PLoS Genetics
- Joint Analysis of Functional Genomic Data and Genome-wide Association Studies of 18 Human Traits
- (2014) Joseph K. Pickrell AMERICAN JOURNAL OF HUMAN GENETICS
- QuASAR: quantitative allele-specific analysis of reads
- (2014) Chris T. Harvey et al. BIOINFORMATICS
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2014) Suhas S.P. Rao et al. CELL
- Pancreatic islet enhancer clusters enriched in type 2 diabetes risk-associated variants
- (2014) Lorenzo Pasquali et al. NATURE GENETICS
- Global genomic and transcriptomic analysis of human pancreatic islets reveals novel genes influencing glucose metabolism
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- Chromatin stretch enhancer states drive cell-specific gene regulation and harbor human disease risk variants
- (2013) S. C. J. Parker et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- GENCODE: The reference human genome annotation for The ENCODE Project
- (2012) J. Harrow et al. GENOME RESEARCH
- Research Resource: The Pdx1 Cistrome of Pancreatic Islets
- (2012) Cynthia Khoo et al. MOLECULAR ENDOCRINOLOGY
- Topological domains in mammalian genomes identified by analysis of chromatin interactions
- (2012) Jesse R. Dixon et al. NATURE
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- (2011) Timothy L. Bailey BIOINFORMATICS
- FIMO: scanning for occurrences of a given motif
- (2011) Charles E. Grant et al. BIOINFORMATICS
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- (2011) N. Dai et al. GENES & DEVELOPMENT
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- (2011) J. Rozowsky et al. Molecular Systems Biology
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- (2010) Heng Li et al. BIOINFORMATICS
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- METAL: fast and efficient meta-analysis of genomewide association scans
- (2010) C. J. Willer et al. BIOINFORMATICS
- Global Epigenomic Analysis of Primary Human Pancreatic Islets Provides Insights into Type 2 Diabetes Susceptibility Loci
- (2010) Michael L. Stitzel et al. Cell Metabolism
- Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities
- (2010) A. Jolma et al. GENOME RESEARCH
- Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data
- (2010) R. Pique-Regi et al. GENOME RESEARCH
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- (2009) Bo Li et al. BIOINFORMATICS
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- (2009) H. Li et al. BIOINFORMATICS
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- (2008) Yong Zhang et al. GENOME BIOLOGY
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