FDA-ARGOS is a database with public quality-controlled reference genomes for diagnostic use and regulatory science
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Title
FDA-ARGOS is a database with public quality-controlled reference genomes for diagnostic use and regulatory science
Authors
Keywords
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Journal
Nature Communications
Volume 10, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2019-07-25
DOI
10.1038/s41467-019-11306-6
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Note: Only part of the references are listed.- Comprehensive viral enrichment enables sensitive respiratory virus genomic identification and analysis by next generation sequencing
- (2018) Brigid M. O'Flaherty et al. GENOME RESEARCH
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- (2018) Stacy Ciufo et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
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- (2017) Sergey Koren et al. GENOME RESEARCH
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- (2017) Carrie Arnold NATURE MEDICINE
- Integrated genomic and interfacility patient-transfer data reveal the transmission pathways of multidrug-resistant Klebsiella pneumoniae in a regional outbreak
- (2017) Evan S. Snitkin et al. Science Translational Medicine
- Acute West Nile Virus Meningoencephalitis Diagnosed Via Metagenomic Deep Sequencing of Cerebrospinal Fluid in a Renal Transplant Patient
- (2016) M. R. Wilson et al. AMERICAN JOURNAL OF TRANSPLANTATION
- Assuring the Quality of Next-Generation Sequencing in Clinical Microbiology and Public Health Laboratories
- (2016) Amy S. Gargis et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Virus Variation Resource – improved response to emergent viral outbreaks
- (2016) Eneida L. Hatcher et al. NUCLEIC ACIDS RESEARCH
- NCBI prokaryotic genome annotation pipeline
- (2016) Tatiana Tatusova et al. NUCLEIC ACIDS RESEARCH
- Targeted next-generation sequencing for the detection of ciprofloxacin resistance markers using molecular inversion probes
- (2016) Christopher P. Stefan et al. Scientific Reports
- Diagnosis of Neuroinvasive Astrovirus Infection in an Immunocompromised Adult With Encephalitis by Unbiased Next-Generation Sequencing
- (2015) Samia N. Naccache et al. CLINICAL INFECTIOUS DISEASES
- Insights from 20 years of bacterial genome sequencing
- (2015) Miriam Land et al. FUNCTIONAL & INTEGRATIVE GENOMICS
- Assembling large genomes with single-molecule sequencing and locality-sensitive hashing
- (2015) Konstantin Berlin et al. NATURE BIOTECHNOLOGY
- Virome Capture Sequencing Enables Sensitive Viral Diagnosis and Comprehensive Virome Analysis
- (2015) Thomas Briese et al. mBio
- Making the Leap from Research Laboratory to Clinic: Challenges and Opportunities for Next-Generation Sequencing in Infectious Disease Diagnostics
- (2015) Brittany Goldberg et al. mBio
- Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing
- (2015) Alexander L. Greninger et al. Genome Medicine
- A Year of Infection in the Intensive Care Unit: Prospective Whole Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic Transmissions and Novel Microbiota
- (2015) David J. Roach et al. PLoS Genetics
- Performance of genetic programming optimised Bowtie2 on genome comparison and analytic testing (GCAT) benchmarks
- (2015) W B Langdon BioData Mining
- Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics
- (2015) Ebrahim Afshinnekoo et al. Cell Systems
- Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics
- (2015) Ebrahim Afshinnekoo et al. Cell Systems
- Quality scores for 32,000 genomes
- (2015) Miriam L Land et al. Standards in Genomic Sciences
- Actionable Diagnosis of Neuroleptospirosis by Next-Generation Sequencing
- (2014) Michael R. Wilson et al. NEW ENGLAND JOURNAL OF MEDICINE
- Development and Evaluation of a Panel of Filovirus Sequence Capture Probes for Pathogen Detection by Next-Generation Sequencing
- (2014) Jeffrey W. Koehler et al. PLoS One
- Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
- (2014) Bruce J. Walker et al. PLoS One
- Kraken: ultrafast metagenomic sequence classification using exact alignments
- (2014) Derrick E Wood et al. GENOME BIOLOGY
- Scalable metagenomic taxonomy classification using a reference genome database
- (2013) Sasha K. Ames et al. BIOINFORMATICS
- The DNA data deluge
- (2013) M. C. Schatz et al. IEEE SPECTRUM
- Predictive Diagnostics for Escherichia coli Infections Based on the Clonal Association of Antimicrobial Resistance and Clinical Outcome
- (2013) V. Tchesnokova et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
- (2013) Chen-Shan Chin et al. NATURE METHODS
- Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
- (2012) M. Kearse et al. BIOINFORMATICS
- Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory
- (2012) Mark J Chaisson et al. BMC BIOINFORMATICS
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Hybrid error correction and de novo assembly of single-molecule sequencing reads
- (2012) Sergey Koren et al. NATURE BIOTECHNOLOGY
- Tracking a Hospital Outbreak of Carbapenem-Resistant Klebsiella pneumoniae with Whole-Genome Sequencing
- (2012) E. S. Snitkin et al. Science Translational Medicine
- Solving the Problem: Genome Annotation Standards before the Data Deluge
- (2011) William Klimke et al. Standards in Genomic Sciences
- Comprehensive Panel of Real-Time TaqMan™ Polymerase Chain Reaction Assays for Detection and Absolute Quantification of Filoviruses, Arenaviruses, and New World Hantaviruses
- (2010) Adrienne R. Trombley et al. AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE
- Towards Viral Genome Annotation Standards, Report from the 2010 NCBI Annotation Workshop
- (2010) James Rodney Brister et al. Viruses-Basel
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Database indexing for production MegaBLAST searches
- (2008) Aleksandr Morgulis et al. BIOINFORMATICS
- Toward an Online Repository of Standard Operating Procedures (SOPs) for (Meta)genomic Annotation
- (2008) Samuel V. Angiuoli et al. OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY
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